4L0L,4BJP,2Z2L,2WAF,5TRO,3ZG5,3UN7,1NRF,2IWB,1M6K,1XA1,4WM9


Conserved Protein Domain Family
Transpeptidase

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pfam00905: Transpeptidase (this model, PSSM-Id:334309 is obsolete and has been replaced by 425939)
Click on image for an interactive view with Cn3D
Penicillin binding protein transpeptidase domain
The active site serine is conserved in all members of this family.
Statistics
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PSSM-Id: 334309
Aligned: 53 rows
Threshold Bit Score: 133.66
Created: 16-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4L0L_A       205 GSLVIMDVKTGEILAMTNQPTYnpnnrrnlqpaamrnraMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQ-- 282 Pseudomonas aer...
Q9K319        24 TGCFLYADGNGQALSSEGD--------------------CSSQLPPASTFKIPLALMGYDSGFLV-DEEHPALPFKPGyd 82  Aeromonas hydro...
Q9ZHF7        25 ICTIVADAATGKAVLHEGK--------------------CDERVTPASTFKLALAVMGFDHGFLK-DEHTPVEHFRHGdp 83  Ralstonia picke...
Q98LR0        12 QCTLIADAASGKVLYQDGT--------------------CDQPFSPASTFKVPLSLIGYDAGILS-DEHTPSWDYKPEfn 70  Mesorhizobium loti
Q7AUV5        35 GTIVIESLTTRQRLVHNDPR-------------------AQQRYPAASTFKVLNTLIALEEGAISGENQIFHWNGTQYs- 94  uncultured bact...
Q9EY51        42 GTIVVVDERTNGNSTSVYNESR-----------------AQQRYSPASTFKIPHTLFALDAGAVRDEFHVFRWDGAKRs- 103 Acinetobacter b...
Q55926        76 GTIVVLDQRGGAHQLWVYNQER-----------------ADRAYSPASTFKIPHSLFALDAGVVRDEFQVFEWDGVERn- 137 Synechocystis s...
WP_014386432  42 GTIVVADERQTDRVILVFDQVR-----------------SEKRYSPASTFKIPHTLFALDAGAARDEFQVFRWDGIKRs- 103 Gammaproteobact...
WP_014845076  23 TCFLVQENQT--VLKHEGKD-------------------CNKRFAPESTFKIALSLMGFDSGILK-DTLNPEWPYKKEye 80  Legionellaceae
WP_073972255  24 GCFLLYDASTNAEIAQFNKAK------------------CATQMAPDSTFKIALSLMAFDAEIID-QKTIFKWDKTPKg- 83  Klebsiella pneu...
4L0L_A       283 ---IGRYTIRdvsrnsrqlDLTGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGnLPNhrKWpkae 359 Pseudomonas aer...
Q9K319        83 -dwLPAWRETt--------TPRRWETYSVVWFSQQITEWLGMERFQQYVDRFDYGNRDLSGNPGKHDG-LTQ--AWl--s 148 Aeromonas hydro...
Q9ZHF7        84 dwgGEAWHQPi--------DPALWLKYSVVWYSQRITHAMGAQTFQAYVRKLGYGNMDVSGDPGKNNG-MDR--SWi--t 150 Ralstonia picke...
Q98LR0        71 -aaKRDQKIV---------DPVIWEKDSVLWYSREITRKLGPESFAGYVSKLGYGNKDVSGNPGKNDG-LTH--SWv--n 135 Mesorhizobium loti
Q7AUV5        95 ---IANWNQDq--------TLDSAFKVSCVWCYQQIALRVGALKYPAYIQQTNYGH-----LLEPFNG--TE--FWl--d 152 uncultured bact...
Q9EY51       104 ---FAGHNQDq--------NLRSAMRNSTVWVYQLFAKEIGENKARSYLEKLNYGN----ADPSTKSG---D--YWi--d 161 Acinetobacter b...
Q55926       138 ---FAPHNQDq--------TLRSAMRNSAVWVYEIFAAEIGEAKAREYLTQIDYGN----VDSSTSKG---A--YWi--d 195 Synechocystis s...
WP_014386432 104 ---FAAHNQDq--------DLRSAMRNSTVWIYELFAKEIGEDKARRYLKQIDYGN----ADPSTSNG---D--YWi--d 161 Gammaproteobact...
WP_014845076  81 -lyLNVWKYPh--------NPRTWIRDSCVWYSQVLTQQLGMTRFKNYVDAFHYGNQDISGDKGQNNG-LTH--SWl--s 146 Legionellaceae
WP_073972255  84 ---MEIWNSNh--------TPKTWMQFSVVWVSQEITQKIGLNKIKNYLKDFDYGNQDFSGDKERNNG-LTE--AWl--e 147 Klebsiella pneu...
4L0L_A       360 TAtlaygygLSVTAIQLAHAYAALANdgksvplsmtrvdrvpdGVQVISPEVASTVQGMLQQVVEAQggvfraqvpGYHA 439 Pseudomonas aer...
Q9K319       149 SS-------LAISPQEQARFLGKMVS-----------------GKLPVSAQTLQYTANILKVSESDG----------WQI 194 Aeromonas hydro...
Q9ZHF7       151 SS-------LKISPEEQVGLMRRIVN-----------------RQLPVSAHTYEMLDRTVQTWQVPG---------GWAV 197 Ralstonia picke...
Q98LR0       136 SS-------LKITPVEQVDFLRKLLA-----------------RKLPVSAKAYDLTSAIIPTFQAGG----------WTV 181 Mesorhizobium loti
Q7AUV5       153 GS-------LTISAEEQVAFLRRVVE-----------------RKLPFKASSYDSLKKVMFADENAQ----------YRL 198 uncultured bact...
Q9EY51       162 GN-------LAISANEQISILKKLYR-----------------NELPFRVEHQRLVKDLMIVEAKRD----------WIL 207 Acinetobacter b...
Q55926       196 GA-------LTISAQEQIHFLQKLYQ-----------------NELPFRIEHQRLVKDIIIVEAGRN----------WIL 241 Synechocystis s...
WP_014386432 162 GN-------LAIAAQEQIAFLRKLYH-----------------NELPFRVEHQRLVKDLMIVEAGRN----------WIL 207 Gammaproteobact...
WP_014845076 147 SS-------LAISPSEQIQFLQKIVN-----------------KKLSVNPKAFTMTKDILYIQELAG---------GWKL 193 Legionellaceae
WP_073972255 148 SS-------LKISPEEQIQFLRKIIN-----------------HNLPVKNSAIENTIENMYLQDLDN---------STKL 194 Klebsiella pneu...
4L0L_A       440 AGKSGTARKVSVGTKGYRENay---rsLFAGFAPA-TDPRIAMVVVIDEPskAg---yFGGLVSAP---VFSKVMA 505 Pseudomonas aeruginosa
Q9K319       195 HGKTGMGYPKKLDGSLNREqq----igWFVGWASK-PGKQLIFVHTVVQK--Pgk-qfASLKAKEE---VLAALPA 259 Aeromonas hydrophila
Q9ZHF7       198 QGKTGTAGPAPGNTSPDGTWdqahaygWFVGWARK-GDKTYVFANLIQDD--KveptsGGIRSRDA---LFARLSE 267 Ralstonia pickettii
Q98LR0       182 QGKTGSTRLADDADKISDKrs----lgWFVGWAKK-DGQQIVFARLVVDA--TrtdmpKGLKTRAA---FLKDLSL 247 Mesorhizobium loti
Q7AUV5       199 YAKTGWATRITPSVG------------WYVGYVEA-QDDVWLFALNLATR--Da----NDLPLRTQ---IAKDALK 252 uncultured bacterium
Q9EY51       208 RAKTGWDGQMG----------------WWVGWVEWpTGPVF-FALNIDTP--Nr---mEDLHKREA---IARAILQ 258 Acinetobacter bauma...
Q55926       242 RAKTGWEGRWG----------------WWVGWVEWpTGPVF-FALNIDTP--Nr---lDDLYKREA---ITRDILQ 292 Synechocystis sp. P...
WP_014386432 208 RAKTGWEGRMG----------------WWVGWVEWpTGPVF-FALNIDTP--Nr---mDDLFKREA---IVRAILR 258 Gammaproteobacteria
WP_014845076 194 YGKTGNGRQLTKDKSQKLSlq----hgWFIGWIEK-DGRVITFTKHIADS--KkhvtfASFRAKNE---TLNQLFY 259 Legionellaceae
WP_073972255 195 YGKTGAGFTANRTLQNG----------WFEGFIISkSGHKYVFVSALTGN--LgsnltSSIKAKKNaitILNTLNL 258 Klebsiella pneumoniae
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