1KLG,4I0P


Conserved Protein Domain Family
MHC_II_alpha

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pfam00993: MHC_II_alpha (this model, PSSM-Id:334338 is obsolete and has been replaced by 460019)
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Class II histocompatibility antigen, alpha domain
Statistics
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PSSM-Id: 334338
Aligned: 89 rows
Threshold Bit Score: 62.9569
Created: 14-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1KLG_A         1 EHVIIQ-AEfylnpDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGR-FASFeA--QGALANIAV--------DKANLE 68  human
Q31621        41 NHTFRH-TLfcqdgIPNIGLSETYDEDELFSFDFSQNTRVPRLPDFAEwAQG-----QGDASAIAF--------DKSFCE 106 house mouse
BAH12721      33 NHTFLH-TVycqdgSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFAD-WAq--E--QGDAPAILF--------DKEFCE 98  human
XP_007622902  42 NHTFRH-TVfcqdgNPSIGLSESYDEDQLF-YDFSQNTRVPRLPDFADwAQE-----QGDASAISF--------DKEFCN 106 Chinese hamster
XP_013222059  41 NHTFRH-TVfcqdgSPSIGLTETYDEDLLFSFDFSRNTRVPRLPEFADwAQD-----QRDASAIVF--------DKGFCE 106 thirteen-lined ...
XP_004770634  41 NHTFQH-TMycqnwNPSIGLSEAYDGDQLFSFDFSQNTRVPRLPEFADwAQK-----PGDTSTIFF--------DKTFCQ 106 domestic ferret
XP_003421115  41 NHTFLH-TMycqngTPSLGLSEAYDEDQLFSFDFSQNSRVPRLPEFADwAKD-----QGDVSAISF--------DKEFCQ 106 African savanna...
4I0P_A         3 NHTFLH-TVycqdgSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADwAQE-----QGDAPAILF--------DKEFCE 68  human
XP_011484642  26 EDFGILgCS-----DYDQEYMYALDGEEKWYADYKKETGVGPQLPLGG-HFINpDgyQFAKVYEQV--------CRRNLK 91  Japanese medaka
XP_699949     17 KDYHKYgLIgacgdADQEDFIVQFDDEQLAHVDFKEQKDVITLPEFAG---------QAVLPPIYVdakraefnCKAYLA 87  zebrafish
1KLG_A        69 IMTKRSNYTP 78  human
Q31621       107 MLMREVSPKL 116 house mouse
BAH12721      99 WMIQQIGPKL 108 human
XP_007622902 107 MLIQEIGPQL 116 Chinese hamster
XP_013222059 107 AMIEKIGPQL 116 thirteen-lined ground squirrel
XP_004770634 107 SMIQEIGPHL 116 domestic ferret
XP_003421115 107 SMIQDIGPQF 116 African savanna elephant
4I0P_A        69 WMIQQIGPKL 78  human
XP_011484642  92 ALKKTTKGLQ 101 Japanese medaka
XP_699949     88 VLREVYASSP 97  zebrafish
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