5C9D,4RGH


Conserved Protein Domain Family
gag-asp_proteas

?
pfam13975: gag-asp_proteas (this model, PSSM-Id:339031 is obsolete and has been replaced by 464060)
gag-polyprotein putative aspartyl protease
This family of putative aspartyl proteases is found pre-dominantly in retroviral proteins.
Statistics
?
PSSM-Id: 339031
Aligned: 299 rows
Threshold Bit Score: 46.4002
Created: 3-Apr-2017
Updated: 23-May-2017
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
5C9D_A        23 INAFVNNVKI-K-FMVDTGASDIALTKEDAQKLGFDLtkl---kytRTYLTANG----EN-KAAPI-TLNSVVIGK-EFK 90  Rickettsia conorii
Q5FQQ7       189 LDIRLNGHAT-D-AVLDTGAASSLISMDGARAAGVTRaml----ekDPVTTGYGltrdPV-KNYRH-HFDTLQMGDiVFR 260 Gluconobacter o...
Q5FP49       196 MTAVLDGHKV-N-MQINTSANRSIIQQWVARKMGISRrml---aqdDEIRVGAG----EVlLGHRH-HFSTLQLGShTLH 265 Gluconobacter o...
GAN88814     187 LDVKINGHLA-D-ATLDTGATNTAMTMHTARRAGVTRemlqqdpvsVVWGITHD----PV-KAYHH-LFSTLEVGDiVFH 258 Gluconobacter f...
CDF21831     298 TSIEVNGHTFdD-MVVETGYPVTMISQAEADRCGLRVls-----dtLLVGSMFG----PL-KVRPA-LIDRLSLGDiVLT 365 Prevotella sp. ...
CCY14959     300 TDIGVNGRLL-NaTIIDTGTPFTLLSRADAETAGVRIlt-----dtVKVATLFG----LT-TATTG-YADEITIGGlSLR 367 Prevotella sp. ...
ERM94692      36 VDIQLNGRST-M-PMVDTGATHNFISGDEAKRLGLHLekd---ssrLKAVNSEA----KP-LLGVA-KAVELKLGGwSGT 104 Amborella trich...
ADP89025      92 IKCSINGVEV-V-ALIDTGAQSSIIPHALAKKCNVKYlid---aryRTLTKGVG----MQtSKGVI-HGLNVKVGNeVWT 161 Trichomonas vag...
XP_011665213 417 LEGKINGQSL-K-LLIDTGATNTLISDKVFDRIEDNRrpel-lpvtSVVLQADG----TPlRTRGK-SRLEVQIGDsLVT 488 purple sea urchin
XP_012551427  56 IKNEVNGTSC-K-LTLDTGASRTVTSFRIASRCFVDHtyn---qvgTNLVTTTG----QH-ISVRGeKKVELKLGSe-VY 124 domestic silkworm
5C9D_A        91 NIKGHVgLGD---L-DIS------LLGMSLLER 113 Rickettsia conorii
Q5FQQ7       261 DVVLRVgGDL---PdTDA------LLGADVLRH 284 Gluconobacter oxydans
Q5FP49       266 DITLDVv-PD---A-EFN------ILGMDVLKH 287 Gluconobacter oxydans
GAN88814     259 NIRLAVvDDL---PdTDV------LLGSDFMRH 282 Gluconobacter frateurii M-2
CDF21831     366 DVPVYVaTADnpsL-ASSfs---gLLGTSALAR 394 Prevotella sp. CAG:617
CCY14959     368 HVRILVrTAG---D-DASghpltnILGLNELRR 396 Prevotella sp. CAG:755
ERM94692     105 -VNLSAvPMN---D-FRV------ILGMDFLRA 126 Amborella trichopoda
ADP89025     162 -NRFVVlDDT---L-DHA------ILGIDWLKK 183 Trichomonas vaginalis
XP_011665213 489 ---TMVtVAS---LkNEG------ILGLDFLVQ 509 purple sea urchin
XP_012551427 125 QHNAIVa-DI---V-DDC------IVGLDFMKT 146 domestic silkworm
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap