3G7L,2RSN


Conserved Protein Domain Family
CD_Chp1_like

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cd18636: CD_Chp1_like 
Click on image for an interactive view with Cn3D
chromodomain of chromodomain-containing protein 1, and similar proteins
CHRomatin Organization Modifier (chromo) domain of chromodomain-containing protein 1 (CHp1), and similar proteins. Chp1 is needed for RNA interference-dependent heterochromatin formation in fission yeast. Chp1 is a member of the RNA-induced transcriptional silencing (RITS) complex which maintains the heterochromatin regions. The chromodomain of the Chp1 component binds the histone H3 lysine 9 methylated tail (H3K9me) and the core of the nucleosome. A chromodomain is a conserved region of about 50 amino acids, found in a variety of chromosomal proteins, and which appears to play a role in the functional organization of the eukaryotic nucleus. The chromodomain is implicated in the binding, of the proteins in which it is found, to methylated histone tails and maybe RNA. A chromodomain may occur as a single instance, in a tandem arrangement, or followed by a related chromo shadow domain.
Statistics
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PSSM-Id: 349286
Aligned: 4 rows
Threshold Bit Score: 67.8604
Created: 30-Nov-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:2RSN; chromodomain of Schizosaccharomyces pombe Chp1 binds H3k9me3 peptide, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     #####                # ## #   # # ##  ##### ##      
3G7L_A      7 VYEVEDILADRVnkngINEYYIKWAGYdwyDNTWEPEQNLFGAEKVLKKWKK 58   fission yeast
Q10103     21 VYEVEDILADRVnkngINEYYIKWAGYdwyDNTWEPEQNLFGAEKVLKKWKK 72   Schizosaccharomyces pombe 972h-
2RSN_A     21 VYEVEDILADRVnkngINEYYIKWAGYdwyDNTWEPEQNLFGAEKVLKKWKK 72   Schizosaccharomyces pombe 972h-
EPX70621   21 VYEVERILADRVnksgKNEYYIKWVGYdshDNTWEPEENLTGASMALKDWQK 72   Schizosaccharomyces octosporus yFS286

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