Conserved Protein Domain Family
M14-like

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cd06228: M14-like 
Peptidase M14-like domain; uncharacterized subfamily
A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.
Statistics
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PSSM-Id: 349447
Aligned: 9 rows
Threshold Bit Score: 397.141
Created: 28-Dec-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteactive site
Feature 1: Zn binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:[H] [ED] [H]Click to see conserved feature residue pattern help
Evidence:
  • Comment:Metallocarboxypeptidases share the zinc binding motif HXXE...H, where the zinc ion is penta-coordinated to ND1 atoms of the histidines, OE1 and OE2 atoms of the glutamic acid, and to a water molecule in a slightly distorted tetrahedral manner.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #  #                                                                   
EAT87877     174 YHLYLSAGMHARERGGPDNLIYWISDLLaankagtGLTYGrkty--------------------tnaQVKSILa-AGIVF 232  Phaeosphaeria ...
AJC53447      53 DCVMLIGGVHAREWGSCEILVYFAADLLrahhthsGLAYGgksy--------------------saaQVKTLLddLEIVV 112  Streptomyces s...
SAL53901      53 DAVMMIGGVHAREWGSCEILINFATDLLsaytnnaGLQYGgktf--------------------saaTVQGMVntLEFVV 112  Burkholderia s...
ARV43896      53 KTIFITGGVHAREWGSCEICVFLAADLLeayeqntGLIYGgktf--------------------sskEVKSLIesVDFLI 112  Bacillus subtilis
GAD57495      53 KTVIYVGGVHAREWIPPDALVYLAADLLearkggtGLTYGeari--------------------tadEISQIFanMQLLI 112  Loktanella cin...
OFY62530      53 PGVYLVGCLHAREWGSADLLLYLAETLLisytnntDVTLIgatf--------------------tadKIRSILenVELII 112  Bacteroidetes ...
WP_011558180  53 IPALFIGGVHAREWVPPDALLSFAEKLVeaktlarDIVYPrfesggvpyenpsnaahdkapyvvaaaDVAAILrrFDIIV 132  Mycobacterium
WP_011023513 150 VGVLFTGSMHAREWGGSDICITFLVNLInayrannGITYGgksf--------------------tadQVHTILenIDLFV 209  Methanosarcina...
WP_012405009 149 PGIYFLGGVHAREWGSPDILIHFVQLLSnaytthtPIKIGsrtf--------------------saaDIKHVIetKDLFV 208  Paraburkholder...
Feature 1                                                                                        
EAT87877     233 FPaVNPDGIAydqs------sgslWRKNRNTrsgss--gssiGVDINRNFDFLWNFrkyfdpg---espastsPSSEAFY 301  Phaeosphaeria ...
AJC53447     113 FPlVNPDGRKysqt------vepmWRKNRNTaygng-egdcvGVDINRNYDFLFDAatafapta-gvrvssdpCDPQLYH 184  Streptomyces s...
SAL53901     113 YPlVNPDGRLysqqhd--aailngWRKNRNTassgg-dpnriGVDINRNYDFLWDFaskmaps---spgassdPADETFH 186  Burkholderia s...
ARV43896     113 FPdVNPDGRFysqm------keamWRRNRNPvdsgd-vnqciGVDINRNFDFLWNFpdhfsplaavqtstdpcSMSQTYH 185  Bacillus subtilis
GAD57495     113 LPcANPDGRVysqe------vdpdWRKNRVPnpmpd-ggmchGVDLNRNFDVAWDFrrtfapn---avsasddPCHKYIY 182  Loktanella cin...
OFY62530     113 FPvVNPDGRTynqe------sgisWRKNRAPtsqa----gvlGTDINRNFNFLWDYpqyflpg---typastnPQWETYY 179  Bacteroidetes ...
WP_011558180 133 LPlVNPDGRWvsvtapkenaenrlWRKNRRSavag----sclGVDINRNYDIAWDFqryydtaaasrvkastkPCAGTFH 208  Mycobacterium
WP_011023513 210 FPdVNPDGKNysqt------qdvwWRKNRNPntavs--pstpGVDLNRNFDFLWDSgigt----------sssPASSTYK 271  Methanosarcina...
WP_012405009 209 FPqANPDGRHysmt------aesmWRKNRRPapaghtkpqccGVDINRNYNFLWNFpqyfdpqs-pianstdpCDYEVYI 281  Paraburkholder...
Feature 1                                      #                                                 
EAT87877     302 Gta-aaSEPETKNHISVYDsfpkirWFMDIHSatgDILYSWGdDENQNTNTqmNFMNAAYDGKRGpv--gDTVYREYapa 378  Phaeosphaeria ...
AJC53447     185 Gpg-pfSEPETRNVRWLLDayprtrWFIDVHSfseDMLYVWGdDQDQSTDPsmNFLNHTFDGVRGda--gDTQYREFipk 261  Streptomyces s...
SAL53901     187 Gtg-afSEPETRNVQWLVDavprtrWFIDVHSyseLILYNWGdDQNQSNDPamNFRNAAWDGKRGv---rNDVYAEYips 262  Burkholderia s...
ARV43896     186 Gss-peSEPETKNVVWMFDrfpqikWYLDIHChgeKILTSWGdDENQSNQPnmNFKNPAFNQVRGle--gDSTYKEFips 262  Bacillus subtilis
GAD57495     183 VgpeaaSEPETRNIVWLLDhytgarWYLDIHSavpAVFHNWGlDDIQTDTPemNFLNPAHDGQRGia--gDTAYREFiee 260  Loktanella cin...
OFY62530     180 Gta-pfSEAETKNVKELADlhpnirYFVDVHSagqLLLYPWGdDTNQTNDPlmNFRNSSYNAMRGni--dDTTYSEYmeq 256  Bacteroidetes ...
WP_011558180 209 Gps-plSEPETRNVANLIDaek-veVFVDVHMtgrSVSFPWGmETNQSTERamSFGNTAFDGKRDgvaatATRYGEFvdn 286  Mycobacterium
WP_011023513 272 Geg-afSEPETRNVRYLFDtyknigYFVDIHSyseLILYSWGdDDNQTTYPeqNFLNPVYDGKRGip--nDTRYGEFisp 348  Methanosarcina...
WP_012405009 282 Gps-aeSEPETQNAVWMFDtypnirYFVDLHSyseDILYNWGdDEDQSSHPdmNFQNAAYDGKRGia--nDNAYREFiks 358  Paraburkholder...
Feature 1                                                                                        
EAT87877     379 advtniknvasKTVAAMKAv---------------gGRSYSSMQAVGLYATs-GASDDYAYSRHfansaknKVHGFTMEF 442  Phaeosphaeria ...
AJC53447     262 idfdheielarDFRDGLQAv---------------rGRKYTAKSAFDLYPTc-GTSDDYAFGRHfvdpakgKVLAYTIEW 325  Streptomyces s...
SAL53901     263 ddeavaaalanRMKAAITAv---------------rGRSYTAEPSYGLYPTs-GASDDYVYARHwlnpakaKTYGFVIEW 326  Burkholderia s...
ARV43896     263 ddrtitialanKMAQGIKAv---------------rGRNYAVQQAFALYPTs-GTTDDYAYSRHttnpsdaKIYGFTIEW 326  Bacillus subtilis
GAD57495     261 adaaellrlsqLMAKEIHKv---------------rGDDYEVSAAFSLYATs-GASDDYAYSRHhanqdkpKVLGFTMEC 324  Loktanella cin...
OFY62530     257 vdltryqntsnRLKLALQQv---------------rSKQYTPGPTSTTLYIvsGASLDYMYSRHivdrtkrKIDTFLIEW 321  Bacteroidetes ...
WP_011558180 287 dl----nnllaDLGLAMAKeivdsagaspvarrrstYAVSQSAGMEGDGETytGVADDYAFSRQfaagvdrRCVAFTIEC 362  Mycobacterium
WP_011023513 349 pdrdkavnlahRMNGALAAv---------------rGKIYTVQQAVGLYPTs-ATSDDYVFSRHivnglnrKVYTYTIEF 412  Methanosarcina...
WP_012405009 359 edkkiavhlanAMRDAIRAs---------------rGRVYKTEQSMSLYPTa-GTSDDYAFSRHivdakkaKVFSYTIEW 422  Paraburkholder...
Feature 1                                              
EAT87877     443 Gya------------tNFYPts-sEFNQNILDTNAGFM 467  Phaeosphaeria nodorum SN15
AJC53447     326 Gt--------------EFQPpw-nEMENIIKDVSAGLV 348  Streptomyces sp. 769
SAL53901     327 Gt--------------RFHPaw-sEMELIIDDISAALI 349  Burkholderia sp. LMG 22934
ARV43896     327 Gt--------------EFQPpw-tEMQHIISEVSAGIV 349  Bacillus subtilis
GAD57495     325 Gh--------------DFQPef-nEAENVMREVSAALV 347  Loktanella cinnabarina LL-001
OFY62530     322 Gq--------------AFQPay-sEMTEIIMDVSSALI 344  Bacteroidetes bacterium RBG_13_42_15
WP_011558180 363 GltksqnpdnpdedegGFQPnytdVYPKIEREVHAGLF 400  Mycobacterium
WP_011023513 413 Gq--------------EFVPpf-sEMNNIIKDVCAAMG 435  Methanosarcina acetivorans
WP_012405009 423 Gspd---------nptPFHPay-pEMKQIIDEVTSGLL 450  Paraburkholderia phymatum

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