5IBK,1FQV,1LDK,5JH5,2OVR,2P1M,3L2O,3MKS,5AN3,1NEX,5HYW,5V4B


Conserved Protein Domain Family
BTB_POZ_SKP1

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cd18322: BTB_POZ_SKP1 
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BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in S-phase kinase-associated protein 1 (SKP1) and similar proteins
SKP1 is also called cyclin-A/CDK2-associated protein p19 (p19A), organ of Corti protein 2 (OCP-2), organ of Corti protein II (OCP-II), RNA polymerase II elongation factor-like protein, transcription elongation factor B polypeptide 1-like, or p19skp1. It is an essential component of the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex, which mediates the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription. SKP1 serves as an adaptor protein that links the F-box protein to CUL1. SKP1 and CUL1 are invariant components of all SCF complexes, while F-box proteins are variable substrate binding modules that determine specificity. SKP1 belongs to the BTB/POZ domain family; the domain is a common protein-protein interaction motif of about 100 amino acids.
Statistics
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PSSM-Id: 349631
Aligned: 74 rows
Threshold Bit Score: 117.308
Created: 16-Oct-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
F-box proteincullin binding
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:F-box protein binding site [polypeptide binding site]
Evidence:
  • Comment:In the SCF (SKP1-CUL1-F-box protein) ubiquitin ligase complex, SKP1 serves as an adaptor that links the F-box protein to CUL1.
  • Comment:SKP1 and CUL1 are invariant components of all SCF complexes, while F-box proteins are variable substrate binding modules that determine specificity.
  • Structure:5JH5: Homo sapiens SKP1 in complex with F-box protein KDM2B, contacts at 4A.
    View structure with Cn3D
  • Structure:1FQV: Homo sapiens SKP1 in complex with F-box protein SKP2, contacts at 4A.
    View structure with Cn3D
  • Structure:2OVR: Homo sapiens SKP1 in complex with F-box/wd repeat protein 7 (FBXW7), contacts at 4A.
    View structure with Cn3D
  • Structure:2P1M: Arabidopsis thaliana SKP1 in complex with F-box protein TIR1, contacts at 4A.
    View structure with Cn3D
  • Structure:3L2O: Homo sapiens SKP1 in complex with FBXO4, contacts at 4A.
    View structure with Cn3D
  • Structure:1NEX: Saccharomyces cerevisiae SKP1 in complex with F-box protein Cdc4, contacts at 4A.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
5IBK_A         5 SIKLQSSDGEIFEVDVEIAKQ----SVTIKTMLEDLg--------MDPVPLPNV-NAAILKKVIQWCTHHkddpg----- 66  human
5JH5_B         2 SIKLQSSDGEIFEVDVEIAKQ----SVTIKTXLEDLgxdd--egdDDPVPLPNV-NAAILKKVIQWCTHHkddpppped- 73  human
NP_495638     24 LLQLTSSDGHLLQGDIRALLL----SSTLAATIRELgydkeycaeLKPVPVNNV-VGFTLKLLIEWCDKHkeddpaial- 97  Caenorhabditis ...
NP_502902     20 MYKVESNDGTVFEISDEAVKQ----SNTLSNLISTCaped--vasMDPIPITNV-TGNILKMVIEWCEKHkgealpvd-- 90  Caenorhabditis ...
NP_501128     31 IFILISSDGEKFQTDGHCIRH----SKVLMQASKSLet------pDTPIQVEKV-QGDTLNRVLEWCNNHrddgkyv--- 96  Caenorhabditis ...
XP_002648725   7 RIRFKTKDNVVLESSVAAMTK----SPTVRDYLINTgge----pdSGEIYLENI-SARAMRIIIKWCEEHidypcien-- 75  Caenorhabditis ...
XP_002642581  18 YFSLESCDKEIVKISDLAVPQ----MVTINNLVSGLgyda-ekaaKNVMPIDNI-TGVTLKRAVAWCEHHrgvefpeek- 90  Caenorhabditis ...
XP_002775708   7 VVKVRTSDGVIVPIPLKAARF----SILVNNMIDDAsds----inDEEIPLPNV-TSKTLSKVVQWCEYHidhpvsvitk 77  Perkinsus marin...
ADV40355       3 NLKLKSGDEVILEISSKVANKfnlfLALQRQLGFDMd-------vDDVFPVRKY-RSSILRKAIEWMEHHvddppeva-- 72  western black w...
GAU89520      58 IVKVKCSDGQIFSMKATTARQ----SRIIGELLDELeaag-gdltKHSFPLPKTiKSRIFRKILPWLQHHakdtdaes-- 130 Ramazzottius va...
Feature 1                                #    #   #  #    #   #  ## ##  #
5IBK_A        67 ------gsgtdDIPVWDQEFLKVDQg-tLFELILAANYLDIKGLLDVTCKTVANMI 115 human
5JH5_B        74 --denkekrtdDIPVWDQEFLKVDQg-tLFELILAANYLDIKGLLDVTCKTVANXI 126 human
NP_495638     98 ---aekdkkniCIPSWDRHFLSRLPmsnLFDLITAAYHLDVTGLINYGCKTVANSA 150 Caenorhabditis elegans
NP_502902     91 ---ddsvpkhiTVPEWDTNFLKIDNe-vLFDLIVACNYLDVPGLMNYGCKMVAMMA 142 Caenorhabditis elegans
NP_501128     97 ----sqcgpslRLPQWDFRWLKDLDnqeLVDLINASNDLQMQQLMDYACKTVANMA 148 Caenorhabditis elegans
XP_002648725  76 ---sddpmgkpTPTEFDRELLKVGNd-lLHELLCACVFLELYGLMDQGSRCVSSQM 127 Caenorhabditis briggsae
XP_002642581  91 ---nesfprqtNIPEWDMNFLKELEdkeLEELTIAVNYLEIKQLLRYCCKKIAMMA 143 Caenorhabditis briggsae
XP_002775708  78 plkmggcltdnGVSDWDNKFVDLPEe-eLFDVMLAANFMDIKPLLELCCASVASSI 132 Perkinsus marinus ATCC 50983
ADV40355      73 ---hdlpvsllSMNEWDNRFVDVDRd-vLFDLLNVASFFNLNGLRNLVIDALANSI 124 western black widow
GAU89520     131 ---wqltkresDIPEWDQAFMQSAKdenVFYDMMNATDTLDIKVLRSLCCKCVAHS 183 Ramazzottius varieornatus

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