Conserved Protein Domain Family
BTB_POZ_KCNV1

?
cd18424: BTB_POZ_KCNV1 
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily V member 1 (KCNV1)
KCNV1, also called neuronal potassium channel alpha subunit HNKA or voltage-gated potassium channel subunit Kv8.1, is a new neuronal voltage-gated potassium channel alpha subunit with specific inhibitory properties towards Shab and Shaw channels. It modulates KCNB1 (also known as Kv2.1) and KCNB2 (also known as Kv2.2) channel activity by shifting the threshold for inactivation to more negative values and by slowing the rate of inactivation. It can also down-regulate the channel activity of KCNB1, KCNB2, KCNC4 (also known as Kv3.4) and KCND1 (also known as Kv4.1), possibly by trapping them in intracellular membranes. Voltage-gated potassium (Kv) channels are composed of alpha subunits, which form the actual conductance pore, and cytoplasmic beta subunits, which are auxiliary proteins that associate with alpha subunits to modulate the activity of the Kv channel. KCNV1 is a regulatory alpha subunit that cannot form a functional homo-tetrameric channel. It forms hetero-tetrameric channels (with other functional alpha subunits) through its BTB/POZ domain, also known as tetramerization (T1) domain, which is a versatile protein-protein interaction motif.
Statistics
?
PSSM-Id: 349731
Aligned: 6 rows
Threshold Bit Score: 225.466
Created: 12-Sep-2017
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative
Feature 1:putative tetramer interface [polypeptide binding site]
Evidence:
  • Comment:based on the tetramer structures of Rattus norvegicus voltage-gated potassium channels Kv1.2 and Kv4.3

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1           # ########  #                                             # ##  #  #   #  #  
Q6PIU1        41 FTVNVGGSRFVLSQQALSCFPHTRLGKLAvvvasyrrpgalaavpspLELCDDANPVDNEYFFDRSSQAFRYVLHYYRTG 120 human
XP_006009615  42 LIINVGGSRFVLSQQMLLSYPETRLGKLAiser-----------dtvLQLCDDVNFVDNEYFFDRSSQAFKYIVNYYKTG 110 coelacanth
XP_007899845  41 FVINVGGSRFVLSQETLSTYPETRLGKLAvseq-----------dsmLELCDDANFVDNEYFFDRSSQTFKYIINYYKTG 109 elephant shark
XP_002939028  61 LTINVGGSRFILSHKVLSNHPETRLGRLVssgg-----------qevYELCDDANLMDNEYFFDRSSQMFKYIMNFYKTG 129 western clawed ...
XP_012711590  54 FVINVGGSRYVLSQELLASHPETRLGKLAccsr-----------dsvLELCDDADFLTNEFFFDRNSQTFQYVMNFYQTG 122 mummichog
OCT77103      65 LTINVGGRRFILSQKVLSNHPETRLGRLSssvg-----------qevYDLCDDANLLDNEYFFDRSSQMFEYIMNFYKTG 133 African clawed ...
Feature 1        # #       ##  #                         
Q6PIU1       121 RLHVMEQLCALSFLQEIQYWGIDELSIDSCCRDRYFRRKE 160 human
XP_006009615 111 KLHVMDQLCAISFLQEIEYWGIDEVKIGSCCREKYYRRKE 150 coelacanth
XP_007899845 110 RLHVNEELCAMSFLQEIEYWGIDELSIDACCRDKYYKRKE 149 elephant shark
XP_002939028 130 HLHVMEELCAVSFLQEIQYWGIDELNIDLCCRERYYRKKL 169 western clawed frog
XP_012711590 123 HLHVMEELCEISFLQEIEYWGIDELRINSCCRERYYRRKE 162 mummichog
OCT77103     134 HLHVMEELCAVSFLQEIQYWGIDELSIDLCCRERYYRKKL 173 African clawed frog

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap