1NIP,1CP2,4WZB,4WZA,1DE0,1XD8,1XDB,1RW4,2C8V,1G20


Conserved Protein Domain Family
NifH

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cd02040: NifH 
Click on image for an interactive view with Cn3D
nitrogenase component II NifH
NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Statistics
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PSSM-Id: 349759
Aligned: 56 rows
Threshold Bit Score: 346.808
Created: 14-Dec-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:ADP complexed with Mg2+, binding site located at dimer interface.
  • Structure:1NIP; Azotobacter vinelandii nitrogenase iron protein binds MgADP at 4A
    View structure with Cn3D
  • Citation:PMID 1529353

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #######                        ##                                        
1NIP_A         3 RQCAIYGKGGIGKSTTTQNLVAALAEmgkKVMIVGCDPKADSTRLILhSKAQNTIMEMAAEagtvedleledVLKAGYgG 82  Azotobacter vin...
WP_008796949   2 LKIAIYGKGGIGKSTISSNLSAIISKsgkKVLHVGCDPKGDSTRNLM-GRKIPTVISILKEkdnl---nredIIYKGFnG 77  Fusobacterium
WP_075756586  10 LKIAFYGKGGIGKSTVSANVSAALASqgcKTLHIGCDPKADSARCLV-GRKIPTVLQQLQIkpegi--drndIVFPGFgG 86  Sporomusa sphae...
SDO20003      25 KRIAFYGKGGIGKSTIAANVSAAFAKmgkRVLHIGCDPKSDSTRCLM-RKRIPTVIQKLNEkgeqv--tvqdILFMGEtG 101 Eubacterium lim...
WP_072854335   6 KRIAFYGKGGIGKSTIASNLSAVLASegrKVLHIGCDPKADSTRLLM-GRRIPTVLEQQLEhqgti--rredILFQSScG 82  Lactonifactor l...
WP_007490275   2 LRIAFYGKGGIGKSTVAAHLSAAFARtgkRVLHIGCDPKADSTRCLT-SGRIPTVLETLGRseell--areqLVFPGAfG 78  Clostridiales
WP_062808014   4 RRVAFYGKGGIGKSTIASNVSALLAMqgkKVLHIGCDPKADSTRLLC-KERIKTVLEVLEEkdype--redlVYRSES-G 79  Blautia sp. Mar...
KLU70689       4 IRIAFYGKGGIGKSTIASNVSAVLALegkKVLHIGCDPKADSTRGLT-GKRIPTLLDQLNQkdell--vredVLFAGVnG 80  Robinsoniella s...
WP_081621979   6 LKIAFYGKGGIGKSTLASNVSAALASqgkKVLHIGCDPKADSTRFFL-KKRQKTVLEILEEkgei---rrdeIVLQGKlD 81  Fusobacterium r...
CDF30674       2 YKLAVYGKGGIGKSSISSNLSYILSErgmKVLHVGCDPKHDSTRLLTgGVPQRTFMDSFSGrge------gdVIESGTnG 75  Methanoculleus ...
Feature 1                                                                                        
1NIP_A        83 VKCVESGGPEPGVGCAGRGVITAINFLEEegayeddlDFVFYDVlGDVVCGGFAMPIRenkAQEIYIVCSGEMMAMYAAN 162 Azotobacter vin...
WP_008796949  78 IECVETGGPEAGIGCAGRGIITTMEELEDlkvfdedrDVIVYDVlGDVVCGGFAVPMRekyADVIYIVTSSEFMSIFAAN 157 Fusobacterium
WP_075756586  87 VDCIEAGGPEAGIGCAGRGIITMMEELKYlelwregwDAVIYDVlGDVVCGGFSVPMReryADTVYIVTSAEFMSLYAAN 166 Sporomusa sphae...
SDO20003     102 VACVEAGGPEAGIGCAGMGISTTLETLEKlgifeeswDLILYDVlGDVVCGGFSMPMRkkcVDQVYIVTSSELMSLYAAN 181 Eubacterium lim...
WP_072854335  83 VWCIEAGGPRAGRGCAGIGITTMADTLDCleilkedwDVILYDVlGDVVCGGFAMPMRkhfVDKVYIVTSPDFMSLYAAN 162 Lactonifactor l...
WP_007490275  79 VSCVEAGGPQAGAGCAGLGITAMADELNRlgileepwDVVVYDVlGDVVCGGFAVPMRkhfVDRVYLITSADFMALYAAN 158 Clostridiales
WP_062808014  80 VWCVESGGPEAGNGCAGMGIITAMKELERlgvfeedwDVVIYDVlGDVVCGGFSVPMRqryVDRVYIVSSADFMSLYAAN 159 Blautia sp. Mar...
KLU70689      81 VQCLEAGGPQAGCGCAGLGITAAMDELERmgildeswDVIVYDVlGDVVCGGFSVPMRqhyADQVYIVTSPDYMSIYAAN 160 Robinsoniella s...
WP_081621979  82 IFCIETGGPKAGIGCAGLGISTTMAELERigildenwDAIIYDVlGDVVCGGFAIPMRkhyVDKICVVTSADYMSLYAAN 161 Fusobacterium r...
CDF30674      76 IYCVECGGAEPGIGCAGKGMAAMLDYVERntp--ddtDVRVCDVlGDVVCGGFSVPMRrdnVDGIILVVSEEFMSIYAAN 153 Methanoculleus ...
Feature 1                                                                                        
1NIP_A       163 NISKGIVKYAnsgsVRLGGLICNSRntdrEDELIIALANKLgtqMIHFVPRdNVVQRAEIR--RMTVIEYDPKAKQADEY 240 Azotobacter vin...
WP_008796949 158 NIMKSIKNFSkmknIKFGGLIHNQRnnnsSINILKIFADMTkskIIGEIPFsKELIKSELN--GKTIAEMYPNSNLYNNF 235 Fusobacterium
WP_075756586 167 NIMKAISRSQgarsVTLGGLIHNCRtgesKREAVEQFALLTgtqVVADVPFsREITLSELA--GKTVLEKYPDSEAAGFF 244 Sporomusa sphae...
SDO20003     182 NIMKSIVRYSaraqPLLGGLIHNRArpgtDHRAVERFGELTgslIAASVSQsDTLRLADYQ--KTTVFEQDEGEALQKSF 259 Eubacterium lim...
WP_072854335 163 NIMRGVASYAyg-gVRMGGLVLNHLkgvsEEEPVRRFSELTgaeICARLEEsVQIKAADYR--QELLQERYPKTPVCRVL 239 Lactonifactor l...
WP_007490275 159 NIMRGVARYSga-aPLLGGLIQNRShgagEDALVRSFAEQSgtrVVGILPEdRQLRRADYL--HTTVHHLEPDGAAAMRF 235 Clostridiales
WP_062808014 160 NILKGVVNYSde-rNLLGGFVFNHIreqeEECIAEEFTNRVkgrMAAIVREsKELKLADFRkeIYTQNMSAPDSENWKAF 238 Blautia sp. Mar...
KLU70689     161 NILKGIRRYSaednSLLGGLVLNHVkderDIRIGERFSVKTgapITVTIREsSEMRMAEFQ--RMLFTQEFPYGMNTAAL 238 Robinsoniella s...
WP_081621979 162 NILNGIKNYQseknPLVGILIGNKIvsqvEEEIIKHFAEHTnieIGALIKDsSSFKFSDFE--RKLILESGKFLDSKAEI 239 Fusobacterium r...
CDF30674     154 NILRGIRNLNg--gRCVLGMVLNSRdp-eGRSRVEAFSEAAgvrILGEISRsAVFSKAEGA--GKTVSELFPDSPAYKQL 228 Methanoculleus ...
Feature 1                                                   
1NIP_A       241 RALARKVVDn-----------kLLVIPNPIt---mDELEELLM 269 Azotobacter vinelandii
WP_008796949 236 LELSEKILSn-----------qDDVSFSPLs---eEEMEYLAA 264 Fusobacterium
WP_075756586 245 KELAGVIAKh-----------qGQTHIKALn---dDELEKFSH 273 Sporomusa sphaeroides
SDO20003     260 MTLARAIARq-----------eAGTLPKPLs---dAEMDSLGE 288 Eubacterium limosum
WP_072854335 240 EDLAAHIIAg-----------rSMDAVRPLselemDEFRQEIS 271 Lactonifactor longoviformis
WP_007490275 236 LELAQRLWDt------------QPTSPRPLg---dEALEAFCR 263 Clostridiales
WP_062808014 239 CRLSEDICRtdersvsrsqnkaEEVLPIPLn---vDEIEKFGM 278 Blautia sp. Marseille-P2398
KLU70689     239 KKFANALSGh-----------kAVRCFRGLd---aEEMEQFGM 267 Robinsoniella sp. RHS
WP_081621979 240 LELADRINLi-----------nNSKELFPLt---dEKLEEFRE 268 Fusobacterium russii
CDF30674     229 AHIADMVCDa------------VSGRLEPLs---aSPLSDKAM 256 Methanoculleus sp. CAG:1088

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