2BEK,2XJ9,4DZZ,3PG5,5U1G,5K5Z,1WCV,3K9G,2OZE,4PFS,3EZ9,3EZ2,3EZ7,5IF9,5U1J,2XIT,2XJ4,3CWQ


Conserved Protein Domain Family
ParAB_family

?
cd02042: ParAB_family 
Click on image for an interactive view with Cn3D
partition proteins ParAB family
ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.
Statistics
?
PSSM-Id: 349760
Aligned: 302 rows
Threshold Bit Score: 56.7794
Created: 15-Dec-2004
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
active sitedimer interface
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:catalytic site locates on dimer interface.
  • Structure:2BEK; Thermus thermophilus Soj protein binds MgATP at 4A distance
    View structure with Cn3D

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                ########                     # #                                        
2BEK_A         7 RRIALANQKGGVGKTTTAINLAAYLarlgkRVLLVDLApQGNATSGLgvraergvyhllqgepleglvhpvdgfhl---- 82  Thermus thermop...
AEA29051      17 LVTAFLNQKGGVGKTGVTVGAGGALaemgrRVLMIDLDpQGHLTCEAlrlpeadqdgpnlaraltgeyegpiqdliisrp 96  Pseudonocardia ...
NP_682185    171 MIITVFNHKGGVGKTTLTLNLGAAFaatgkRVLLIDIDpQSNLTIGLgidplkdiedqgrkdiahlllepkvtleevvyq 250 Thermosynechoco...
ADD74101      18 KIIAIINQKGGVGKSTIAVNLPFGLykktsRVLLIDLDpQAHSSCIYcpetilydktiatafinkkidinnlileaivhn 97  Rickettsia felis
YP_003767081   2 QITSVVNQKGGVGKTSLSVGTAAALaemgrRVLLVDLDpQGHATTEMlglsevpadrpslakalaktwkgpiedlvvphp 81  Amycolatopsis m...
YP_445085      2 YTIAVINQKGGVGKTVTSVNLATALkhkghDPLVIDYDpQMNATDWLmgreatdddatifdslatwdgdatdewsfanvl 81  Salinibacter ru...
CAI10348      85 FVIAVTVCKGGTGKTVTSVELAVELqllgfRTLLIDLDsQASATQIMgyepdimmeeaesfglsekavvretlanvleay 164 Azoarcus sp. EbN1
NP_665964      1 MRIGVTNQKGGAGKTTTTLNVAGALnqlgnDVLVIDLDpQGHATEGLgfedlyddperdslfdvlpelermdeleqlvve 80  Natrialba phage...
CAI08615       1 MRRVVFNQKGGVGKSTITCNLAAISahegrRTLVVDLDpQGNSTQYLlgrssgevdttladffdqtlnfklnpkktsefi 80  Azoarcus sp. EbN1
NP_747171      1 MRRVVFNQKGGVGKSSIACNLAAVSanegyRTLLIDLDaQANSTQYLtgltgedipmgiadffkqslssgpfskknkvdi 80  Pseudomonas put...
Feature 1                                                                                        
2BEK_A        83 ----------------------------------------------lpatpdlvgatvelagaptalrealrdegYDLVL 116 Thermus thermop...
AEA29051      97 sydggg------------------------------qldvipttlamflvvrdlysrrapetklarlleqlpsdaYDHIL 146 Pseudonocardia ...
NP_682185    251 krwdn---------------------------------lcldvvpshirladqeadlirtididrvlqrklknhpYDVIL 297 Thermosynechoco...
ADD74101      98 eklnn---------------------------------lkiipsniklatvieqisstvyrerilqnhlntikkdYDYII 144 Rickettsia felis
YP_003767081  82 rsnlgk-------------------------------ggaldvvptspgmfdlirrldsfrvpgwqlarviqfanYDHCV 130 Amycolatopsis m...
YP_445085     82 rtsesvgidfip------------------sdrrmaaasfdsvigrspvfpqqfrcrvqefrtaevqrnssstmkHDYCL 143 Salinibacter ru...
CAI10348     165 vssqqggrvrqmpydlkslikkpfgehgphlvpadtflssiertllvatgnrerflrnmldeaakgaipgfdtsiYDVII 244 Azoarcus sp. EbN1
NP_665964     81 hqev-----------------------------------dcvpshetminaedalanvmkreerlemllddadgrWDYVL 125 Natrialba phage...
CAI08615      81 vpspf--------------------------------egldvmpshpgledlqgklesrykiyklrdaleelagrYDCIY 128 Azoarcus sp. EbN1
NP_747171     81 yetpf--------------------------------dnlhvvtataeladlqpkleakhkinklrklldeldedYERIY 128 Pseudomonas put...
Feature 1         #  #                    # # #                                #                 
2BEK_A       117 LDAPPSlsPLTLNALAaaEGVVVPVQAEyYALEGVAGLLATLeevragl-nprlrllGILVTMYdgrt-llaQQVEAQLR 194 Thermus thermop...
AEA29051     147 IDCPPSldILTDTALVaaDGVVIPVQPSnTSLRALRLLIDQIaaiendlrlprrelyGMVPGLYrrplsgiqRFKMAELE 226 Pseudonocardia ...
NP_682185    298 IDPPPAfgKVNAIALMasHGVLVPIQFApYPIRAIEYVLARLeafrpvm-dnpprllGIAVNMYdqrnsavnAQMQQRLQ 376 Thermosynechoco...
ADD74101     145 LDCPPTlgILAVNAIYcaNSIIIPTNYGrYSLDGMADLLTAIqeiked----hdykfFILKNLYeqknsqtnRYINEQLK 220 Rickettsia felis
YP_003767081 131 IDCPPAldVLTNNALAasHGILVPVQPDkTSIRALRLLADQVryveqtvgrqplswfGLVPSLYrrpishyaAAALQEMY 210 Amycolatopsis m...
YP_445085    144 VDCPPSlgRSIATALAgaDGIIVPIHADrFSMRGVSQLQDTIkqirkvh-ndslrilGLLPNDLdlrs-glvSDMQEKFE 221 Salinibacter ru...
CAI10348     245 LDCPPTvsTTTSSGMVaaDLLIAPIRMDvFSIKGISKMISEIhvfkdew--slkpelIILPTHYstnv-griSRMRRELE 321 Azoarcus sp. EbN1
NP_665964    126 VDCPPNlgVLTDNAIVatGNVLIPAQAKsTSIRAIELLFKQLrsiesaf--gpvdelALVANEVevd--geaDEMMAWFR 201 Natrialba phage...
CAI08615     129 IDTPPAlnFYTRSALIaaEGCLIPFDCDeFSRRALYSLLENVqeirsdh-nrdlqveGIVVNQFqara-alpQKVVQELI 206 Azoarcus sp. EbN1
NP_747171    129 IDTPPAlnFYAVSALIaaDRVLIPFDCDsFSRQALYGLLAEIedlkedh-nedlvveGIVVNQFqsra-slpQQMLDELL 206 Pseudomonas put...

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap