Conserved Protein Domain Family
DEXHc_HELLS_SMARCA6

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cd18009: DEXHc_HELLS_SMARCA6 
DEXH-box helicase domain of HELLS
HELLS (helicase, lymphoid specific, also known as Lsh or SMARCA6) is a major epigenetic regulator crucial for normal heterochromatin structure and function. HELLS is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350767
Aligned: 8 rows
Threshold Bit Score: 420.639
Created: 3-Feb-2014
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
ATP bindingDEAD box
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on the structure of Saccharomyces cerevisiae Chd1 with bound gamma-thio-ATP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                      #######                                #          
Q9NRZ9       220 GGVMRWYQVEGMEWLRMLWeNGINGILADEMGLGKTVQCIATIALMIqrgvpGPFLVCGPLSTLPNWMAEFKRFtPDIPT 299 human
CBX99128     218 GGTMRSYQLEGLEWMLSLYeNGINGILADEMGLGKTIQTIAMLAHLWenksyGPFLIAAPLSTTSNWVAEFKKWtPSMPV 297 blackleg of rap...
EGG12083     152 GVTMRPYQLAGMHWLATLYeNGLNGILADEMGLGKTLQTISFLCYLRergvwGPFLIVCPLSTVANWVNEFERFcPTVPV 231 Melampsora lari...
NP_001086442 218 GGVMRWYQIEGMEWLRMLWeNGINGILADEMGLGKTVQCIATISMMVergvpGPFFVCGPLSTLPNWVSEFKRFsPEIPV 297 African clawed ...
NP_001032178 230 GGVMRWYQVEGIEWLRMLWeNGINGILADEMGLGKTIQCIAHIAMMVekkvlGPFLVVAPLSTLPNWISEFKRFtPEVSV 309 zebrafish
Q9XFH4       199 GGQLKSYQLKGVKWLISLWqNGLNGILADQMGLGKTIQTIGFLSHLKgngldGPYLVIAPLSTLSNWFNEIARFtPSINA 278 thale cress
CBK22034      20 KGKLLPYQLQGVSWMMRLFeNGSHGMLADEMGLGKTIQVIGLLACLReagvwGPVLIIAPLSTLGNWVSEFAKWlPSVEV 99  Blastocystis ho...
P43610       219 NCILKPYQLEGLNWLITLYeNGLNGILADEMGLGKTVQSIALLAFIYemdtkGPFLVTAPLSTLDNWMNEFAKFaPDLPV 298 Saccharomyces c...
Feature 1                                                                                        
Q9NRZ9       300 MLYHGTQEERQKLVRNiykrkg--------------------------------tlqihPVVITSFEIAMRDrnal-qhc 346 human
CBX99128     298 MLYHGDKKERERLRKTrlrnp---------------------------------gtdqfPIMVTSYEICMNDrkyl-tsf 343 blackleg of rap...
EGG12083     232 VLYHGSKDERNTLRAErmsppeddpkawlgkpinkrsnkrnnlksnltawtstntketfPVVVTSYEIVMNDrqyl-sqy 310 Melampsora lari...
NP_001086442 298 LLYHGNAQDRRRLARKinkreg--------------------------------slqlfPVVITSFEIAMRDrpvl-qhn 344 African clawed ...
NP_001032178 310 LLYHGPQKERLDLVKKirqhqg--------------------------------slrmcPVVVTSFEIAMRDrkfl-qrf 356 zebrafish
Q9XFH4       279 IIYHGDKNQRDELRRKhmpkt---------------------------------vgpkfPIVITSYEVAMNDakrilrhy 325 thale cress
CBK22034     100 IKYHGTKEERKQLRTQlqaeet-------------------------------krgmdnAVFVTSYEMVRFDasaf-qrv 147 Blastocystis ho...
P43610       299 LKYYGTNGYKERSAKLknffk---------------------------------qhggtGIVITSYEIILRDtdli-msq 344 Saccharomyces c...
Feature 1               ##                                                                       
Q9NRZ9       347 yWKYLIVDEGHRIKNmkCRLIRELKRFNa---DNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDitslset 423 human
CBX99128     344 gWQFIIIDEGHRIKNldCRLIRELQQFQs---ANRLLITGTPLQNNLTELWSLLHFLLPTVFDKLSTFESWFDfsglkdk 420 blackleg of rap...
EGG12083     311 aWSYIVVDESHRLKNleCKLVQELKSYTs---ANRLLLTGTPLHNNLKELWSLLNFILPEIFDDYSSFEQWFDlssvtaa 387 Melampsora lari...
NP_001086442 345 aWKYMILDEGHRIKNmnCRLIQELKLFRs---DNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLRSFESWFDisgisqn 421 African clawed ...
NP_001032178 357 hWNYLIVDEGHRIKNlnCRLVQELKMLPt---DNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDistitsd 433 zebrafish
Q9XFH4       326 pWKYVVIDEGHRLKNhkCKLLRELKHLKm---DNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDfseknkn 402 thale cress
CBK22034     148 eWFYLIVDEGHRLKNneCQLMQCLFTFAhspnTSRLILTGTPLQNNLKELWSLMHFLLPDVFSSAADFLKWLGvlacsdr 227 Blastocystis ho...
P43610       345 nWKFLIVDEGHRLKNinCRLIKELKKINt---SNRLLLTGTPLQNNLAELWSLLNFIMPDIFADFEIFNKWFDfdslnlg 421 Saccharomyces c...
Feature 1                                             
Q9NRZ9       424 aedii-------akereqnvlhmLHQILTPFLLRRLK 453 human
CBX99128     421 ssyesl-----lseerqqylvksLHAILKPFLLRRVK 452 blackleg of rapeseed fungus
EGG12083     388 tdsaaa-----lssaqaqhivrnLHAILKPFMLRRMK 419 Melampsora larici-populina 98AG31
NP_001086442 422 aadiv-------anereqnilhmLHQILTPFLLRRLK 451 African clawed frog
NP_001032178 434 aeniv-------anereqnilhmLHLILTPFLLRRLK 463 zebrafish
Q9XFH4       403 eatke------eeekrraqvvskLHGILRPFILRRMK 433 thale cress
CBK22034     228 rfdfnn----ssseslkadivntLRKVVSPFFLRRVK 260 Blastocystis hominis
P43610       422 sgsnsealnklindelqknlisnLHTILKPFLLRRLK 458 Saccharomyces cerevisiae S288c

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