Conserved Protein Domain Family
DEXHc_HARP_SMARCAL1

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cd18010: DEXHc_HARP_SMARCAL1 
DEXH-box helicase domain of SMARCAL1
SMARCAL1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, also known as HARP) is recruited to stalled replication forks to promote repair and helps restart replication. It plays a role in DNA repair, telomere maintenance and replication fork stability in response to DNA replication stress. Mutations cause Schimke Immunoosseous Dysplasia. SMARCAL1 is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350768
Aligned: 27 rows
Threshold Bit Score: 263.682
Created: 3-Feb-2014
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
ATP bindingDEAD box
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on the structure of Saccharomyces cerevisiae Chd1 with bound gamma-thio-ATP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                              #######                             #                   
Q9NZC9     436 LMPFQRAGVNFAIakGGRLLLADDMGLGKTIQAICIAAFYRkeWPLLVVVPSSVRFTWEQAFLRWLPsls-pdcINVVVT 514  human
CAK59159   127 LYQYQRDCIKQGLkfNGRILIADDMGVGKTVQSLALASMYKqnWPLLIMCPSPLRLNWQDEIIHWLKiyk--tdIQLINS 204  Paramecium tetra...
EGG19971   546 LLPFQARGVLFGVqhNGRCMIGDEMGLGKTIQALGIASYFRsyWPLLIICPSSLRHNWSKEVQRWFRsdi-tqqDISIMM 624  Dictyostelium fa...
EGB11699     5 LLKFQREGVAFGLraKGRVLIADEMGCGKSAQAIRLCLHYFaeWPALIVCPASLRYTWAHELEKWLPtla--psEISVAK 82   Aureococcus anop...
CBH17476   180 LHPFQKRGVGFVIarGGRGMIADDMGLGKTVQAIAFAHHYRneWPLLIICPLSLVDNWEKEIIRFCSi-----pVGRIAT 254  Trypanosoma bruc...
EGG23911   371 LMPFQLKGLEFGVehEGRCIVGDEMGLGKTVQAIAISYYYRkeWPLLIITPSSLRLVWADALDKFLPgifksgeINLVMS 450  Dictyostelium fa...
CBN77005   252 LLPFQRDGVLYGLrrRGRCLIADEMGTGKTLQALGVMGCYRedWPLLIVAPASMRLMWAEEVERWYPfla-pseIHLIKG 330  Ectocarpus silic...
ABO98315   197 LYSFQEEGVRFALrrRGRALIADQMGVGKTLQAIAIADAYRdaGPLLCVVPAAMRFVWADELERWLTdmt-prqLSVIFG 275  Ostreococcus luc...
CBH17697   183 LHRHQADGICKALsfGGRAMFADEMGVGKTLQAIGTLAALNa-FPALIVCPAALRHMWADELEKWLMdvlnmddIRVITS 261  Trypanosoma bruc...
CBZ24460   183 MKAHQVEGVKTALrwGGRILFADDMGVGKTIQALATVAALEa-YPLLIVCPSVLKLMWADLIEQYLHeqvsveeIHLIHG 261  Leishmania mexic...
Feature 1                                                            ##                        
Q9NZC9     515 GKdrl----------------tagLINIVSFDLLSKlekq----lktpFKVVIIDESHFLKns------rTARCRAAMPV 568  human
CAK59159   205 GRegir---------------mnaKIVIVSYDIVSKikdsl---msrkFQICIADECHYLKsp------sAIRSQACVPI 260  Paramecium tetra...
EGG19971   625 SGdns----------------adqLVNIVSYDLVTRvykkk--lanqhFRAIICDESHYLKnv------dAKRTSAVLSL 680  Dictyostelium fa...
EGB11699    83 GRsdkeav-----------crkgiKFCIVTQSLFTEssgvakavedrkFQVVVVDESHGLRtr------dSQRTKLLLPI 145  Aureococcus anop...
CBH17476   255 AHttkrfr-----------idgvhSIVIVPYSSLKClegv-----svtFKVVIVDESHYIKsg------tAQRTTATLKL 312  Trypanosoma bruc...
EGG23911   451 GKcgl-----------------ngLVNIISYDLCRTkledv---laknFKVVIADESHFIKdf------kSQRTQCVGKI 504  Dictyostelium fa...
CBN77005   331 NKdklyltn--------vsrhlwpRVVVVSYFMLRMlsasv---gkgdWKAVIFDESHMIStslggesaqSQQVTVCRQV 399  Ectocarpus silic...
ABO98315   276 SSdkfmldklaaesktaktwtggrRVVVTSYHMLAPlleef---lavkWGCVIADESHTMHvskkyggdeTKLTDAAWRL 352  Ostreococcus luc...
CBH17697   262 SSdflsr-------------sdepKVVVTSFHMVSLlanhm---ksrqWSSLVVDESHILHtsvd-ascdAHYTTLLCEL 324  Trypanosoma bruc...
CBZ24460   262 ANdalsi-------------dsqpKVVLVSYHMAAVlekql---qarsWKCLLCDESHLLHtnvs--gadATYTRVVAAI 323  Leishmania mexic...
Feature 1                                                                                      
Q9NZC9     569 LkvaKRVILLSGTPAMSRPaELYTQIIAVKPtffpqfhafglrycda---------------krmpwgwdysgssnlgEL 633  human
CAK59159   261 LrqcMRTILLTGTPALSKPrDLFNLLNIIRPdifgsfkefgyrycdpk-------------lsrytkgidfdgasnlkEL 327  Paramecium tetra...
EGG19971   681 VqsaTIRILLTGTPALSRPiELYPQLAALDApifdkqedfgkrycag----------------vkgrygwdfsgnshlAE 744  Dictyostelium fa...
EGB11699   146 MkaaPRLVLLSGTPALARPvELFSQVHAIDGdafgtynkftkrycap----------------fkgrfgwdvsgasnvEE 209  Aureococcus anop...
CBH17476   313 CraaKRVLLLSGTPAMSRPvELYSQLQAFVNpscmpsktqfcarycn---------------sfqgrfgvdctghsniSE 377  Trypanosoma bruc...
EGG23911   505 MakaNRKLLLTGTPAISRPcELYQQIHCIAPfflgwkdyvfrycnay----------------ydkfhrlnyfgnsnsKE 568  Dictyostelium fa...
CBN77005   400 AgraKRVVMLSGTPSLSKPfDLFNQVEALSPgllgrapllkakqgfaasycggtmrgqmsrgghvnrvpfisgseypdEL 479  Ectocarpus silic...
ABO98315   353 IkraKYAVLTTGTPSLTKPfDMFYQIDALRPgilgkkwdfaehycdiq--------------fdqkgrsdvsggsrllEL 418  Ostreococcus luc...
CBH17697   325 GrrtKYCLLLTGTPSLSTPfDLFNQVDTVCPgllgssrfefalrycr---------------iefspyfrtfectrstEL 389  Trypanosoma bruc...
CBZ24460   324 GqrtPHCLLLSGTPATDNPfDLFNQIDTLRPkllgesrfefamrycq---------------ltfspylqvggstrrvEF 388  Leishmania mexic...
Feature 1                  
Q9NZC9     634 KLLLEEAVMLRR 645  human
CAK59159   328 HFLLTNYIMIRR 339  Paramecium tetraurelia strain d4-2
EGG19971   745 LHYLLRSVMIRR 756  Dictyostelium fasciculatum
EGB11699   210 LHGKLARVMVRR 221  Aureococcus anophagefferens
CBH17476   378 LHALIQHFVVRR 389  Trypanosoma brucei gambiense DAL972
EGG23911   569 LNTYLNTIMIRR 580  Dictyostelium fasciculatum
CBN77005   480 HLLLRNEVMIRR 491  Ectocarpus siliculosus
ABO98315   419 RTLLTHTTMVRR 430  Ostreococcus lucimarinus CCE9901
CBH17697   390 HSLLNATCMIRR 401  Trypanosoma brucei gambiense DAL972
CBZ24460   389 SSLLRSCCMLRR 400  Leishmania mexicana MHOM/GT/2001/U1103

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