5AGA,5A9J


Conserved Protein Domain Family
DEXHc_POLQ-like

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cd18026: DEXHc_POLQ-like 
Click on image for an interactive view with Cn3D
DEXH-box helicase domain of DNA polymerase theta
DNA polymerase theta (POLQ) is important in the repair of genomic double-strand breaks (DSBs). POLQ contains an N-terminal type II DEAD box helicase domain which contains the ATP-binding region.
Statistics
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PSSM-Id: 350784
Aligned: 22 rows
Threshold Bit Score: 229.025
Created: 18-Feb-2014
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       # #    #                     #######                              
5AGA_A         12 LPKAVLEKYHsf-gVKKMFEWQAECLLLgqv-leGKNLVYSAPTSAGKTLVAELLILKRVlem-rkKALFILPFVSVAKE 88   human
5A9J_A         78 LPKAVLEKYHsf-gVKKMFEWQAECLLLgqv-leGKNLVYSAPTSAGKTLVAELLILKRVlem-rkKALFILPFVSVAKE 154  human
NP_955452      76 LPKAVLEKYHsf-gVKKMFEWQAECLLLgqv-leGKNLVYSAPTSAGKTLVAELLILKRVlem-rkKALFILPFVSVAKE 152  human
CAZ81986      156 LRREVVMGFShc-gIGQMYPWQAECLAMsgllagESNLVYTAPTSAGKSLVADILAIRKVvne-rrKAIIVLPFIAIVQE 233  Tuber melanos...
CAK36988      123 LPPGLVANFAaa-gLSSIYQWQASCLLApgllkgDRHLVYTAPTGGGKSLVADVLMLKRIienpgrKAILVLPYVALVQE 201  Aspergillus n...
XP_009293682  283 LPKPVLEKYQsl-gVHRMFEWQAECLTLgkv-leGQNLVYSAPTSAGKTLVSELLILKRVlet-rqKAMFILPFVSVARE 359  zebrafish
AEE86105      499 LPSEVCSVYNkk-gISKLYPWQVECLQVdgv-lqKRNLVYCASTSAGKSFVAEVLMLRRVirt-gkMALLVLPYVSICAE 575  thale cress
NP_524333     216 LPMSIQAEYKkk-gVVDMFDWQVECLSKprllfeHCNLVYSAPTSAGKTLVSEILMLKTVler-gkKVLLILPFISVVRE 293  fruit fly
EFV57460       48 IPEDVVTCYNqm-gIVKLFAWQYQCLTLpgvlseGANLVYSAPTSAGKTLVAEILLLKRVlqt-rrRALFILPFVSVARE 125  Trichinella s...
AAZ13100      250 LPVSVKDFYAtrrgIKKLYNWQHEVLMRddi-raGGSLVYSLPTSGGKTLVAEISLLRCLinr-gqSCLFVLPFVSLAEE 327  Trypanosoma b...
Feature 1                                                                                         
5AGA_A         89 KKYYLQSLfqe-----------------vgiKVDGYMGStspsrhfsslDIAVCTIERANGLINrlieenkmdlLGMVVV 151  human
5A9J_A        155 KKYYLQSLfqe-----------------vgiKVDGYMGStspsrhfsslDIAVCTIERANGLINrlieenkmdlLGMVVV 217  human
NP_955452     153 KKYYLQSLfqe-----------------vgiKVDGYMGStspsrhfsslDIAVCTIERANGLINrlieenkmdlLGMVVV 215  human
CAZ81986      234 KTRFLKKVlekvrvavpkrgrwdkanlwkhlNIIGFHGGskarmgwkelDVAVCTIEKANALVNaaiedrtvnqLGIVVF 313  Tuber melanos...
CAK36988      202 KLKWLRRIvqd-----------------rsiRVTGYYGGsrtaaswadtDIAVCTIEKANSLINsaieecsigdLGVVVL 264  Aspergillus n...
XP_009293682  360 KMFYLQNVfqe-----------------agiRVEGYMGStsaaggfsalDVAVCTIEKANGLVNrlieedkldlLGTVVV 422  zebrafish
AEE86105      576 KAEHLEVLlep-----------------lgkHVRSYYGNqgggtlpkdtSVAVCTIEKANSLINrlleegrlseLGIIVI 638  thale cress
NP_524333     294 KMFYMQDLltp-----------------agyRVEGFYGGytppggfeslHVAICTIEKANSIVNklmeqgkletIGMVVV 356  fruit fly
EFV57460      126 KMLYLNSVfrn-----------------vgvQVQGYMGTlnpsggfhswDVAVCTIEKANGLINrlveeenvncLGCVVV 188  Trichinella s...
AAZ13100      328 KTDAMIPLgdv-----------------lgfTVDGHYSTrgrfplpvskAVFVCTIEKANSLVNhmleentigrIGTIVV 390  Trypanosoma b...
Feature 1         #                                                                               
5AGA_A        152 DELHMlgdshRGYLLELLLTKICYITrksascqad--------lasslsnaVQIVGMSATlpNLELVASWLnaELYHTDF 223  human
5A9J_A        218 DELHMlgdshRGYLLELLLTKICYITrksascqad--------lasslsnaVQIVGMSATlpNLELVASWLnaELYHTDF 289  human
NP_955452     216 DELHMlgdshRGYLLELLLTKICYITrksascqad--------lasslsnaVQIVGMSATlpNLELVASWLnaELYHTDF 287  human
CAZ81986      314 DELHMlgddhRGYILELLATKLLCLTea----------------------nIQIVGMSATlsNVRVLATWLkaQFYECAF 371  Tuber melanos...
CAK36988      265 DELHMlddehRGYLLELMVTKLLLLRq-----------------------rTQIIGMSATlsNTEMLAEWMnaAYFVSTY 321  Aspergillus n...
XP_009293682  423 DELHMvgdsgRGYLLELLLTKIRYIAqktatrns----------gqststgVQIIGMSATlpNLDLLARWLsaELYSTNY 492  zebrafish
AEE86105      639 DELHMvgdqhRGYLLELMLTKLRYAAgegssesssgessgtssgkadpahgLQIVGMSATmpNVGAVADWLqaALYQTEF 718  thale cress
NP_524333     357 DEVHLisdkgRGYILELLLAKILYMSrrn-------------------glqIQVITMSATleNVQLLQSWLdaELYITNY 417  fruit fly
EFV57460      189 DELHIvnenyRGKILELLLTKLIHFNqklqse--------------fksdrIQLIAMSATlpNLETCAQWLgaKAFRTYH 254  Trichinella s...
AAZ13100      391 DELHMlgetsRGATLELLLTKLLCLRh-----------------------kVQIIGMSATipNLPDIARWLraSCYIGNY 447  Trypanosoma b...
Feature 1           
5AGA_A        224 RP 225  human
5A9J_A        290 RP 291  human
NP_955452     288 RP 289  human
CAZ81986      372 RP 373  Tuber melanosporum Mel28
CAK36988      322 RP 323  Aspergillus niger
XP_009293682  493 RP 494  zebrafish
AEE86105      719 RP 720  thale cress
NP_524333     418 RP 419  fruit fly
EFV57460      255 RP 256  Trichinella spiralis
AAZ13100      448 RP 449  Trypanosoma brucei brucei strain 927/4 GUTat10.1

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