Conserved Protein Domain Family
DEXHc_CHD2

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cd18054: DEXHc_CHD2 
DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
Chromodomain-helicase-DNA-binding protein 2 (CHD2) is a DNA-binding helicase that specifically binds to the promoter of target genes, leading to chromatin remodeling, possibly by promoting deposition of histone H3.3. It is involved in myogenesis via interaction with MYOD1; it binds to myogenic gene regulatory sequences and mediates incorporation of histone H3.3 prior to the onset of myogenic gene expression, promoting their expression. CHD2 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350812
Aligned: 6 rows
Threshold Bit Score: 543.444
Created: 3-Feb-2014
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
ATP bindingDEAD box
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on the structure of Saccharomyces cerevisiae Chd1 with bound gamma-thio-ATP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                        #######                          
E9PZM4        464 RPRFVALKKQPAYLGGESLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLS 543  house mouse
O14647        464 RPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLS 543  human
XP_002933353  467 RPRFVTLKKQPSYIGGEGLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHLHLLYGPFLLVVPLS 546  tropical claw...
XP_005504182  463 RPRFVTLKKQPSYIGSENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLVVVPLS 542 
XP_018594915  477 RPRFVALKKQPSYIGGENLELRDYQLDGLNWLAHSWCRCNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLLVVPLS 556 
XP_007906536  465 RPRFVAMKKQPTYIGSEGLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLVVVPLS 544 
Feature 1                #                                                                 ##     
E9PZM4        544 TLTSWQREFEIWAPeiNVVVYIGDLMSRNTIREYEWIHSQTKrLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLK 623  house mouse
O14647        544 TLTSWQREFEIWAPeiNVVVYIGDLMSRNTIREYEWIHSQTKrLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLK 623  human
XP_002933353  547 TLTSWQREFEVWAPdiNVVVYIGDLGSRNTIREYEWVHQQSKkMKFNALLTTYEILLKDKAVLSSINWAFLGVDEAHRLK 626  tropical claw...
XP_005504182  543 TLTSWQREFEVWAPeiNVVVYIGDLMSRNMIREYEWIHSQSKrLKFNALITTYEILLKDKAVLGSINWAFLGVDEAHRLK 622 
XP_018594915  557 TLTSWQREFNTWAPdmNVVVYLGDVMSRKTIRDYEWVHQQTKrIKFNALLTTYEILLKDKGVLGNINWAFLGVDEAHRLK 636 
XP_007906536  545 TLTSWQREFDIWEPnmNVVVYIGDVMSRNTIREYDWTHPQTKrLKFNVLITTYEILLKDKTVLGSINWAFLGVDEAHRLK 624 
Feature 1                                                                                      
E9PZM4        624 NDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRR 700  house mouse
O14647        624 NDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRR 700  human
XP_002933353  627 NDDSLLYKTLIEFKSNARLLITGTPLQNSLKELWSLLHFIMPEKFECWEDFEDQHGKGRDNGYQSLHKVLEPFLLRR 703  tropical clawed ...
XP_005504182  623 NDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRR 699 
XP_018594915  637 NDDSLLYKTLIDFRSNHRLLITGTPLQNSLKELWSLLHFLMPDKFESWEDFEDVHGKGRDNGYQSLHKVLEPFLLRR 713 
XP_007906536  625 NDDSLLYRTLIDFRSNNRLLITGTPLQNSLKELWSLLHFIMPERFDSWEDFEEEHGKGRENGYQSLHRVLEPFLLRR 701 

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