Conserved Protein Domain Family
DEXHc_HLTF1_SMARC3

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cd18071: DEXHc_HLTF1_SMARC3 
DEXH-box helicase domain of HLTF1
Helicase like transcription factor (HLTF1, also known as HIP116 or SMARCA3) has both helicase and E3 ubiquitin ligase activities and ATP-dependent nucleosome-remodeling activity. HLTF1 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350829
Aligned: 5 rows
Threshold Bit Score: 384.128
Created: 3-Feb-2014
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
ATP bindingDEAD box
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on the structure of Saccharomyces cerevisiae Chd1 with bound gamma-thio-ATP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
EAW78891      240 LLPHQKQALAWMVsrenskelppfweqrnd-------------------------------lyyntitnfsekdrpenVH 288  human
CBJ27911      224 LMTHQKEGLAWMVqrennpdpngarlddgkknnpdsngkgcqshssglppfweqrveggkgvfhntitcssqpcrpasVH 303  Ectocarpus si...
Q9FF61        231 LFAHQKEGLGWLLhreksgelppfweekdg-------------------------------eflntltnyrsdkrpdpLR 279  thale cress
XP_693071     226 LLSHQKQALSWMSsrensndlppfweenkg-------------------------------lyfnvltnfavkkrpekVL 274  zebrafish
XP_003193350  244 LLPHQSQALHWMItrenpqlpkspadpavqfwvkqkg------------------vgnkpdywlnvatktpqneapqlGR 305  Cryptococcus ...
Feature 1                #######                                                                  
EAW78891      289 GGILADDMGLGKTLTAIAVILTNFhdgrplpiervkknllkkeynvnddsmklggnntsekadglskdasrcseqpsisd 368  human
CBJ27911      304 GGILSDDMGLGKTLQVISLILAQPpagtdyvkkvlaveankrlkealdrgetpppqekeltpqqkqeavakk-------- 375  Ectocarpus si...
Q9FF61        280 GGVFADDMGLGKTLTLLSLIAFDRygnaststpteepldgegdkiekkgkkr---------------------------- 331  thale cress
XP_693071     275 GGILADDMGLGKTLTTIALIVSNFhngkplplekckgpsmpsakrkqatskekgvdseesqesmglsplkrlhddtvren 354  zebrafish
XP_003193350  306 GGIIADGMGLGKTLTTISLVLATKndpvgd-------------------------------------------------- 335  Cryptococcus ...
Feature 1                                                                                         
EAW78891      369 ikekskfrmselsssrpkrrktavqyiessdseeietselpqkmkgklknvqsetkgrakgsskviedvafacaltssvp 448  human
CBJ27911      376 ------------------------------------------------------------ykklkkadlerelaakgldt 395  Ectocarpus si...
Q9FF61            --------------------------------------------------------------------------------      thale cress
XP_693071     355 gpqk---------------------------------------------ktkttkkksantkkavvllddvefaaalecs 389  zebrafish
XP_003193350      --------------------------------------------------------------------------------      Cryptococcus ...
Feature 1                                                    #                                    
EAW78891      449 ttkkkmlkkgacavegskktdveerprtTLIICPLSVLSNWIDQFGQHiksdvhlNFYVYYGPdrirepallskqDIVLT 528  human
CBJ27911      396 kgnkndlvgrlstheagltpvdpsvklgTLVVCPMSVIHNWETQFAEHvke-galDVYAYHGGnrnqdptflatkDVVIT 474  Ectocarpus si...
Q9FF61        332 grgkssesvtrkklktddvvgmnvsqktTLIVCPPSVISAWITQLEEHtvp-gilKVYMYHGGertddvnelmkyDIVLT 410  thale cress
XP_693071     390 ssqvvpskkcvkkssvpseisagsvaraTLIVCPLSVLSNWLDQFEQHirtdvtvKVYLYYGSernrsvsllseqDVVLT 469  zebrafish
XP_003193350  336 -----------------------kvsqsTLIVCPLSVLGNWEKQIRDHvsp-sqlTFYTYHGAakgltakklggyDIVLT 391  Cryptococcus ...
Feature 1                                                       ##                                
EAW78891      529 TYNILTHdygtkgd-------------------splhsirWLRVILDEGHAIRNpnAQQTKAVLDLEsERRWVLTGTPIQ 589  human
CBJ27911      475 TYDTLASdfsasggqkaleedvtaavggkpkrrhgvgglgGNRVVLDEAHPFRNnkTNKHKACLALSsRYRWCLTGTPLI 554  Ectocarpus si...
Q9FF61        411 TYGTLAVeesweds--------------------pvkkmeWLRIILDEAHTIKNanAQQSRVVCKLKaSRRWAVTGTPIQ 470  thale cress
XP_693071     470 TYNVLSSdfgnkas-------------------splhnvkWLRVVLDEGHVVRNpnALQSKAVLELQsERRWILSGTPIQ 530  zebrafish
XP_003193350  392 TYQTVAGedgavpdiedtplakk--prlstkkagplatinWKRVVADEGHQLKNpkAKMTVAFANLSaERRWVCTGTPIV 469  Cryptococcus ...
Feature 1                                                                
EAW78891      590 NsLKDLWSLLSFLKLk-PFIDREWWhrtiqrpvtmgdegglrrlqslikNITLRR 643  human
CBJ27911      555 NkPEDIGALFSFLHLa-PASNPRVFlqaigrpirsgsdaglarlrvlmkSVCLRR 608  Ectocarpus siliculosus
Q9FF61        471 NgSFDLYSLMAFLRFe-PFSIKSYWqsliqrplgqgnkkglsrlqvlmaTISLRR 524  thale cress
XP_693071     531 NsLKDLFMLLSFLKLk-PFDVKEWWsriiqrpvtmgdrvglknlqalvkGITLRR 584  zebrafish
XP_003193350  470 NsPNDLGSLLTCLHIcaPLSNPQYFralllrplsrgdptaskllqavvsQILLRR 524  Cryptococcus bacillisporus WM276

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