3OA6,3OA6,4PL6,2EFI,2F5K


Conserved Protein Domain Family
CBD_MSL3_like

?
cd18983: CBD_MSL3_like 
chromo barrel domain of human male-specific lethal complex subunit 3, and similar proteins
This subgroup includes human male-specific lethal (MSL) complex subunit 3 (MSL3, also known as MSL3L1). The MSL3 chromodomain specifically recognizes the H4K20 monomethyl mark, in a DNA-dependent manner, and may be involved in chromosomal targeting of the MSL complex. Also included is MORF-related gene on chromosome 15 (MRG15, also known as MORF4L1) which specifically binds to Lys36-methylated histone H3 and plays a role in transcriptional regulation and in DNA repair. This subgroup also includes Arabidopsis thaliana Morf Related Gene 2 (MRG2) which acts as a H3K4me3/H3K36me3 reader involved in the regulation of Arabidopsis flowering. SH3-fold-beta-barrel domains of the chromo-like superfamily include chromodomains, chromo shadow domains and chromo barrel domains, and are implicated in the recognition of lysine-methylated histone tails and nucleic acids. The chromodomain differs, in that it lacks the first strand of the SH3-fold-beta-barrel. This first strand is altered by insertion in the chromo shadow domains, and chromo barrel domains are typical SH3-fold-beta-barrel domains with sequence similarity to the canonical chromo domain.
Statistics
?
PSSM-Id: 350846
Aligned: 10 rows
Threshold Bit Score: 85.5785
Created: 10-May-2018
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                   ##   ####                     # ####   # #### ###  ##     
3OA6_B        24 EKVLCFepdptKARVLYDAKIVDVIVgkde--kgrkIPEYLIHFNGWNrSWDRWAAEDHVLRDTDENRR 90  human
Q8N5Y2        15 EKVLCFepdptKARVLYDAKIVDVIVgkde--kgrkIPEYLIHFNGWNrSWDRWAAEDHVLRDTDENRR 81  human
3OA6_A        24 EKVLCFepdptKARVLYDAKIVDVIVgkde--kgrkIPEYLIHFNGWNrSWDRWAAEDHVLRDTDENRR 90  human
6919839        9 ERVLCF-----HGPLLYEAKIVDTEMkg-------dVTTYLIHYKGWKnSWDEWVEQDRILQWTEENLK 65  Schizosaccharomyces pombe ...
CAB91737      15 ERVLCF-----HMEMLYEAKILDVQPtes-----gdGWSYKIHYKGWKsSWDDWVPQDRIRKLNDENKD 73  Neurospora crassa
NP_001262588  26 ERVLCF-----HGPLIYEAKVLKTKPda-------tPVEYYIHYAGWSkNWDEWVPENRVLKYNDDNVK 82  fruit fly
4006854       33 ERVLAY-----HGPRVYGAKIIDIPLqvqkvelrkkEWKYFVHYLGWNkNWDEWVSADRLLKHTEENLV 96  thale cress
4PL6_A         8 ERVLAK-----HSDCFYEAKVLKVEFkd-------nEWKYFVHYIGWNkSWDEWIRLDCLLKHSDENIE 64  thale cress
2EFI_A        22 ERVLCFh----GPLLYEAKCVKVAIKd--------kQVKYFIHYSGWNkNWDEWVPESRVLKYVDTNLQ 78  human
2F5K_A        27 ERVLCFh----GPLLYEAKCVKVAIKd--------kQVKYFIHYSGWNkNWDEWVPESRVLKYVDTNLQ 83  human

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap