4P23,6CPL


Conserved Protein Domain Family
MHC_II_alpha

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pfam00993: MHC_II_alpha (this model, PSSM-Id:366405 is obsolete and has been replaced by 460019)
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Class II histocompatibility antigen, alpha domain
Statistics
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PSSM-Id: 366405
Aligned: 93 rows
Threshold Bit Score: 64.4953
Created: 23-Apr-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4P23_C          4 DHVGTYGISvyqspGDIGQYTFEFDGDELFYVDLDKKETVWMLPEFGQLASFDP---QGGLQNIAVVKHNLGVLTKRSNS 80  house mouse
AGA53807       26 EDFGILGCS-----DYDQEYMYALDGEEKWYADYKKETGVGPQLPLGGHFINPDg-yQFAKVYEQVCRRNLKALKKTTKG 99  Japanese medaka
XP_003459305   23 SDIAIGGCS-----ESDGENMYGLDGEEIAYADFNKQEFIYPQPPFIDPITV-PggyESSVAFQHSCRENMKLFGKGMKD 96  Nile tilapia
XP_005465960   23 SDIAVGGCS-----ESDEENMYGLDGEELAYTDFNKKEEIYPLPPFIDPITYGEdayESSVAFQKTCRKNMKQFGEGMKD 97  Nile tilapia
43_pfamImport   1 KDIFLTICS-----ETFGEQIYGLDGEEKWHADFNLQEGVMTLPQFADPASYGEgayEGALSQVENCKSNLGIIKKVYNN 75 
XP_005464763   23 EDIGIVGCS-----DSDGEDMYGLDGEEVRYADFKKQEDINSLPPFADLITCPGc-yEQAVANQQVCKQNLQTLRKMMKD 96  Nile tilapia
XP_013130407   23 tDIHVIGCS-----DFNGEVMFGLDREELWYADFEKQMGVSPQPSFIDPISFGAgayKTAVSNLNTCRQNLQITREGIKD 97  Nile tilapia
XP_019210811   23 GDVHINGCS-----DFDAEDMYGLDGEEVAYADFNNHTEVYILPPFAEPMIY-PgayKQAVTELKVCRHNLKALRAVMKD 96  Nile tilapia
AGA53834        3 EDFQITGCS-----DYDEEFMVNLDGEEIVYTDFKKGTEVDAQPSFVGHITY-AggyGATVLELQGCRNDLEVIRRFTKD 76  Japanese medaka
XP_014331012   23 DSFRVIGCS-----DTDGLDMMTLDGEEVWHADFIHETGVDTLPDFVSHPSF-SglyEQSVGQQQLCKNNLKIIRTGLKD 96  southern platy...
4P23_C         81 TPAT 84  house mouse
AGA53807      100 LQLE 103 Japanese medaka
XP_003459305   97 YPPE 100 Nile tilapia
XP_005465960   98 FPPE 101 Nile tilapia
43_pfamImport  76 PAEP 79 
XP_005464763   97 YPLE 100 Nile tilapia
XP_013130407   98 FPPl 101 Nile tilapia
XP_019210811   97 YPSN 100 Nile tilapia
AGA53834       77 LPLK 80  Japanese medaka
XP_014331012   97 IPDP 100 southern platyfish
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