5GV0,4AKM


Conserved Protein Domain Family
Lamp

?
pfam01299: Lamp (this model, PSSM-Id:366566 is obsolete and has been replaced by 396046)
Click on image for an interactive view with Cn3D
Lysosome-associated membrane glycoprotein (Lamp)
Statistics
?
PSSM-Id: 366566
View PSSM: pfam01299
Aligned: 83 rows
Threshold Bit Score: 102.27
Threshold Setting Gi: 340367885
Created: 24-Apr-2019
Updated: 18-Jul-2019
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
5GV0_A         2 PTVSKYNVTGNNG-TCLLASMALQLNITY-LKKDNKTVTRAFNISPNDT-SSGSCGI-NLVT--LK---VENKNRA---- 68  house mouse
XP_003382483 124 PEKEILVIED----NCFFFEATEIIFTYYdKRFSNTTTSHLSTLYPDPIdAVIGCTK-DSRLhsFKrsyFNATSGSsvln 198 Amphimedon quee...
XP_012996202 225 AKTGTYQVLNGSR-ICIKAEMGIQLIIQ--ETKSVFSPRRYFNIDPNATkASGSCGF-RKSN--LL---LNFPSGS---- 291 Domestic guinea...
Q5XI99       216 AKIGTYEVLNGSR-LCIKAEMGIALIVQ--EKGLDSATQRHFNIDPSLThASGKCGS-QNSN--LF---LNFQGGS---- 282 Norway rat
Q7TST5       218 AKIGTYEVLNGSR-LCIKAEMGLALIVQ--EKDLDSATQRYFNIDPSLThASGKCDS-QKSN--LF---LNFQGGS---- 284 house mouse
XP_003800143 209 ARIGTYQVLNGSK-LCIKAEMGIQLIVR--DKQSVLSPQRYFNIEPNAThTSGNCGF-QKSN--LL---LNFQGGF---- 275 small-eared galago
XP_007669133 222 AAVGTYRVSNGSR-TCVKAVMGIQLIVQ--DRQMG-----YFNIDPNVTkASGSCET-WKAN--LL---LTFSGGF---- 283 platypus
XP_022519213  93 LTLGNYNISEGSL-LCIVLKAAIQIHV------NNSKGNGTFIVQPSMTtSYGQCQNdKTGK--LG---LFFNEGV---- 156 Mexican tetra
XP_005807956 154 LTVGNYSLKTDKGvVCLMAQMALQIKL------STKTVNGTFIIIPSQTiAAGECKE-TKAN--LT---LSFKEGF---- 217 southern platyfish
XP_015195897 180 LTQGTYNVTGTDGnVCILAQMTLRLMVQY-KNTTNSMVQGVFIVQPQQTrASGNCSH-TKSS--LM---LSFHQGH---- 248 spotted gar
5GV0_A        69 LELQFGMNASSSLFFLQGVRLNMTL--PDALVPTFS----ISNHSLKALQATVGNSYKCNTEEHIFVSKMLSLNVFSVQV 142 house mouse
XP_003382483 199 LTFEFALNYVEDSWYLSSLQVVNLT----DGGRIFDygtcGDAINVPEELSYFCSQVNCHGHEQVDDSISVSLDITNLRV 274 Amphimedon quee...
XP_012996202 292 VNFTFTKE--ENSYYISEIGANLTV---SNPERDFQ----GLKSAMVMFETLAGHSFKCVSEQSILLSAQLQLKTMNVQL 362 Domestic guinea...
Q5XI99       283 VNVTFTKE--ENLYYVSEVGAYLTI---SNTEKTYQ----G-KSTMMMFETVVGHSFKCVSEQSIQLSAQLQMKTMNIHL 352 Norway rat
Q7TST5       285 VNITFTKE--ENLYYISEVGAYLTI---SNTEKTYQ----GKKNTLMMFETVVGHSFKCVSEQSIQLSAQLQMKTMNIHL 355 house mouse
XP_003800143 276 VNLTFTKD--EKSYYINEVGASLTV---SNPEIIYR----GLKSGMVMFETVLGHSFRCVSEQSLQLSAQFQLQTMNVQL 346 small-eared galago
XP_007669133 284 VNFNFTKD--GGSYYISSIEARLTV---SSPKVDHH----GVKREVQWFKTLVGHSFQCLSAQRVQLGNDLQLQTVNVQL 354 platypus
XP_022519213 157 IVLNFVKNETTKTVYANSVAVNLTYafTSGVRTTIS----NVNGSTQVFTMSASHSYSCKSE-MVYMGNGVNLEFSQERL 231 Mexican tetra
XP_005807956 218 ITFLFNKNVSDNTAYLNAVSFSLLYsfSVSGNQKYS----AENDSVQLFAAKIGHSYSCKDE-SVFMGNGLSLEVSNNRI 292 southern platyfish
XP_015195897 249 ITFLFTKDSKKNSVFVDSVDVSLNYmfPNAKETNFE----ATNSSVELFKTRIGHSYSCKNE-TVIMRPYLYLELSEQKI 323 spotted gar
5GV0_A       143 QAFKVD 148 house mouse
XP_003382483 275 DAFVKS 280 Amphimedon queenslandica
XP_012996202 363 QAFDWE 368 Domestic guinea pig
Q5XI99       353 QAFDFE 358 Norway rat
Q7TST5       356 QAFDFE 361 house mouse
XP_003800143 347 QAFDFE 352 small-eared galago
XP_007669133 355 QAFDIT 360 platypus
XP_022519213 232 QAFDFG 237 Mexican tetra
XP_005807956 293 QAFNVT 298 southern platyfish
XP_015195897 324 QAFNIT 329 spotted gar
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap