5K31,4AE2


Conserved Protein Domain Family
COLFI

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pfam01410: COLFI (this model, PSSM-Id:366624 is obsolete and has been replaced by 460199)
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Fibrillar collagen C-terminal domain
Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1 alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.
Statistics
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PSSM-Id: 366624
Aligned: 23 rows
Threshold Bit Score: 328.894
Created: 24-Apr-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5K31_A         18 RDLEVDTTLKSLSQQIENIRSPEG-SRKNPARTCRDLKMCHSD----WKSGEYWIDPNQGCNLDAIKVFCNMET-GETCV 91   human
EDO42953     1178 PSVSFMTALEKMEIDVNTIRKPTG-MKNNPAKTCKDLRMDHPD----YVSGYYWIDPNEGSKKDAIRVYCDFSN-DFSCI 1251 starlet sea a...
XP_016790449 1512 glEEVLASLTSLSLELEQLRRPPG-TAERPGLVCHELHRNHPH----LPDGEYWIDPNQGCARDSFRVFCNFTAgGETCL 1586 chimpanzee
NP_001073461 1463 GMEEIFGSLNSLRQEIESMRFPLG-TKESPGRTCQDLHLSQPD----LKDGEYWIDPNQGCARDSFKVYCNFTAgGETCL 1537 zebrafish
P20908       1607 GMEEIFGSLNSLKLEIEQMKRPLG-TQQNPARTCKDLQLCHPD----FPDGEYWVDPNQGCSRDSFKVYCNFTAgGSTCV 1681 human
P12107       1575 GMEEIFGSLNSLKQDIEHMKFPMG-TQTNPARTCKDLQLSHPD----FPDGEYWIDPNQGCSGDSFKVYCNFTSgGETCI 1649 human
Q17A80        613 KFLDMYSSIYSMRQELDRIRKPVG-TRENPGRTCRDLHYGHPQ----FKDGWYWIDPNLGMADDAVYVFCNMTAeGETCV 687  yellow fever ...
NP_001029004  603 RDEEMMVVLKELTNSVENIKAPRGvSKKTAARSCMDIYLAEQQqnivAKNGIRWIDPNGGCTADGIEVYCNFDT-METCV 681  vase tunicate
NP_999674    1199 QDTELLGAISALGQQIELIKAPQGkAKTNPARSCKDVFLNNVE----AESGYYWVDPNLGCQKDAIQVYCEAET-GATCV 1273 purple sea ur...
XP_014830157  211 GMDDVFGSLNNLKQDIERMKFPMG-TQDNPARTCNDLHLSQPD----FPDGEYWIDPNQGCIGDAIKVFCNFTAgGETCI 285  Poecilia mexi...
5K31_A         92 YPTQPSVA-QKNWYISKNpkdKRHVWFGESMTDGFQFEYG----GqGSDPADVAIQLTFLRLMSTEASQQITYHCKNSVA 166  human
EDO42953     1252 SPTKAKLLnLRVQANVNK----KDKWLSEAFEEESQIDY-----------SAEQSQIAFLRVFSKRAYQNVTYNCQNYKA 1316 starlet sea a...
XP_016790449 1587 YPDKKFEIvKLASWSKEK----PGGWYSTFRRGKK-FSYV----D-ADGSPVNVVQLNFLKLLSATARQNFTYSCQNAAA 1656 chimpanzee
NP_001073461 1538 YPSKAVENvKMNSWIKEK----PGSLFSQFAKGNK-FSYV----D-SVGEAVGVVQLGFLRLLSVQARQNLTYHCQRSVA 1607 zebrafish
P20908       1682 FPDKKSEGaRITSWPKEN----PGSWFSEFKRGKL-LSYV----D-AEGNPVGVVQMTFLRLLSASAHQNVTYHCYQSVA 1751 human
P12107       1650 YPDKKSEGvRISSWPKEK----PGSWFSEFKRGKL-LSYL----D-VEGNSINMVQMTFLKLLTASARQNFTYHCHQSAA 1719 human
Q17A80        688 FPDLHSSQmPNIPWRKEN---DKTDWYSNLRGGFR-ISY----------ETVGVVQMTFLRLLSEGAYQNFTYTCMNSVA 753  yellow fever ...
NP_001029004  682 YPTNRHIE-NGTHYTGES----RHVYYGEEMATGSTVRYDpsdeD-RVPHADYTSQLTFLRLLSRQVKQHVTFYCRNMVA 755  vase tunicate
NP_999674    1274 PSTNNVVS-NMTWYVGKT----KRAFFSSMHGGDK-FAY-----------IEDSTQMTFLRLLSTSARQTVTYFCKN--- 1333 purple sea ur...
XP_014830157  286 YPDKKSTGvRISNWPKES----PGSWFSEFKRGKI-LSYV----D-GGDNSINAVQMTFLKLLSSSARQNFTYICHQSVA 355  Poecilia mexi...
5K31_A        167 YMDQQT-GNLKKALLLQGSNEIEIRAEGNSRFTYSVTVDGCTSHTGAWGKTVIEYKTTKSSRLPIIDVAPLDVGAPDQEF 245  human
EDO42953     1317 W------TNRKHSIKLRGDNDLIFHAKSPKKFQPTVILNECTTKDDQWHKTILAIDTKQKHRLPIVDMALFDFGKPHQKV 1390 starlet sea a...
XP_016790449 1657 WLDEAT-GDYSHSARFLGTNGEELSFNQTTAATVSVPQDGCRLRKGQ-TKTLFEFSSSRAGFLPLWDVAATDFGQTNQKF 1734 chimpanzee
NP_001073461 1608 WTDQTTdGGYKRALRLQGANDEEISYE--TSPYIKALIDGCSYRKGL-DRTVLEVNTPQVEQLPLLDIRISDFGEDNQKF 1684 zebrafish
P20908       1752 WQDAAT-GSYDKALRFLGSNDEEMSYD--NNPYIRALVDGCATKKGY-QKTVLEIDTPKVEQVPIVDIMFNDFGEASQKF 1827 human
P12107       1720 WYDVSS-GSYDKALRFLGSNDEEMSYD--NNPFIKTLYDGCASRKGY-EKTVIEINTPKIDQVPIVDVMINDFGDQNQKF 1795 human
Q17A80        754 WYSNLE-ENHDDAIRFLGDNEIDIGYEN-SKLRPNVLVDGCKSGKSK-SETIFEIRTTKLQYLPIIDFYPVDYGQPQQAF 830  yellow fever ...
NP_001029004  756 YYDAAA-DNKAQALKLRGFGDAEFTAEGDPSTTYRVLHDGCTGRPSTWGKTDIEFTTGFVGRMPITDIAPFDIGGADQQF 834  vase tunicate
NP_999674    1334 ---------VQGNPIFLSSSDVELVDDQDSKFNYRTLEDGCSSSSSQWGKSVYEYETKKTTRLPIVDFAPGEVGSESQMF 1404 purple sea ur...
XP_014830157  356 WYDSKA-DNYDRALRFLGSNDEEMSYD--NNPFIKSLMDGCSMKQGY-SRTVLEINTPRIDQLPIIDVMLNDFGESNQRF 431  Poecilia mexi...
5K31_A        246 GFDVGPVCF 254  human
EDO42953     1391 TVEVGSVCF 1399 starlet sea anemone
XP_016790449 1735 GFELGPVCF 1743 chimpanzee
NP_001073461 1685 GFEVGPVCF 1693 zebrafish
P20908       1828 GFEVGPACF 1836 human
P12107       1796 GFEVGPVCF 1804 human
Q17A80        831 GFQVGPVCF 839  yellow fever mosquito
NP_001029004  835 GAEFGPACF 843  vase tunicate
NP_999674    1405 GLEMGPVCF 1413 purple sea urchin
XP_014830157  432 GFEVGSVCF 440  Poecilia mexicana
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