Conserved Protein Domain Family
ApoA-II

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pfam04711: ApoA-II (this model, PSSM-Id:368072 is obsolete and has been replaced by 461404)
Apolipoprotein A-II (ApoA-II)
Apolipoprotein A-II (ApoA-II) is the second major apolipoprotein of high density lipoprotein in human plasma. Mature ApoA-II is present as a dimer of two 77-amino acid chains joined by a disulphide bridge. ApoA-II regulates many steps in HDL metabolism, and its role in coronary heart disease is unclear. In bovine serum, the ApoA-II homolog is present in almost free form. Bovine ApoA-II shows antimicrobial activity against Escherichia coli and yeasts in phosphate buffered saline (PBS).
Statistics
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PSSM-Id: 368072
Aligned: 12 rows
Threshold Bit Score: 111.763
Created: 6-May-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EHB13639      24 QAEEPDLQGLFSQYFQTVTSYGKDLLQKTKPQDLQAQVQSYFEKTQEQLVPLVKKAGTELFNMLSNMIELkKTQPA 99  naked mole-rat
XP_004775983  24 QAEEPDLQSLISQYSEMVATYGKNLVEKVKDPELQAQAKAYFENTQEQLMPLVQKVGVDLINFLSNFMDF-KKQPA 98  domestic ferret
E2RAK7        24 QAEEPNLQSLVSQYFQTVTDYGKDLMEKAKGPELQAQAKAYFEKTQEQLTPLVKKAGTDLLNFLSNFMDL-KTQPA 98  dog
XP_003785901  24 QAEESSLQSLFSQYFQTMADYGKDLVEKVKTPELQAQAEAYFAKSKEQLTPLVKKAGTDLVNFFNYFVDF-GTQss 98  small-eared galago
ELV13288      24 QAEEPNLEGLVSQYVQTLTDYGKELVNKAKGQELLVQAKAYFEKIQERLTPLVNEVRADLPKFFNYFVDL-QAQPA 98  Chinese tree shrew
ELK16368      24 QAEESNVQGLLSQYFQTVADYGKDLVDKAKGSELQAQA--YLEKTQEQLTPLVKKAGNDLIHFFSYFTDL-KT-PA 95  black flying fox
XP_007485040  24 eAQDQGVQSIFSQYFQKLTDIGKDLAEKVKAPEVQTQVQQYFKKSQDQVIPLAQKALTDTMSFFSSLVEA-GKKDA 98  gray short-tailed o...
P09813        24 QADGPDMQSLFTQYFQSMTDYGKDLMEKAKTSEIQSQAKAYFEKTHEQLTPLVRSAGTSLVNFFSSLMNL-EEKPA 98  house mouse
P04638        24 QAAETDVQTLFSQYLQSLTDYGKDLMEKAQPSEIQNQAKAYFQNAQERLTPFVQRTGTNLMDFLSRLMSP-EEKPA 98  Norway rat
XP_003466639  24 QTEESNLQRLFSQYFQTMTSYGKDLLEKVKAQELQTQAQAYFTKTQEELVPLVKKAGNDLFNILSNFVDF-KKTQP 98  Domestic guinea pig
XP_003769682  24 QATEPEVTDFFTQYIRKLADIGKDVAEKVQVPEVQSQVQAYLEKSHEQVIPLAKKALTDTITFFSSLVES-GKKav 98  Tasmanian devil
XP_002760286  24 QAEESSVESLVSQYFQTVSDYGKDLMEKVKSSELQAQAKAYFEKSKEQLTPLVKKAGTDLVNFLNYFMEL-RTPPA 98  white-tufted-ear ma...
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