Conserved Protein Domain Family
SSXT
?
pfam05030: SSXT (this model, PSSM-Id:368251 is obsolete and has been replaced by 428268)
SSXT protein (N-terminal region)
The SSXT or SS18 protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2.
Links
?
Statistics
?
PSSM-Id: 368251
Aligned: 24 rows
Threshold Bit Score: 58.8142
Created: 5-May-2019
Updated: 18-Jul-2019
Structure
?
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
EGT48455      14 AADQQSTVQKLLDENSRLIDIIREYQNQG-RADEAMKHQQLLHRNLMHLSNLADPFLLSQL 73  Caenorhabditis brenneri
Q567E9        14 AQINQETIQRLLDENDQLVRCISEYQQKG-RATECVQYQQILHRNIVYLGTIADASTEIQP 73  zebrafish
ACM43305      14 AEVNQETIQRLLEENDQLIRCIVEYQNKG-RANECVQYQHVLHRNLIYLATIADANPTSAS 73  sheep
OCA36688      14 GQVGEDTVQRLLEENDQLIRCIVEYQNKG-RATECSQYQQILHRNLIYLASIADSGATNtv 73  tropical clawed frog
XP_003229053  14 AEVNQETLRRLMDENDQLIRCIVEYQNKG-RAAECMQLQHTLHRNLIYLATIADASASSNA 73  green anole
EAY09211       4 QELTKEQIQQLLDENTHLIKVILTCQNEG-RIMDAMLYQTRFQLNLTQLAACADNHKHPSQ 63  Trichomonas vaginalis G3
CDS29047      14 PMVNTNTIQKILDDNVQLIRSIISNQQAGnNSHELQQNLQLLHKNLIYLATIADQANSNSS 74  Hymenolepis microstoma
XP_015784271  13 GPTNSAQIQKMLDENSNLIQAVMEAQNKG-EAQKSVHLISTIHRNLLYLGSLSESNPNLAQ 72  two-spotted spider mite
XP_002129850  15 SAVTQETIQKMLDENSRLIQCIVDEQQNG-RMQDCSRYQQILHRNLVWLATVADSNQSNGQ 74  vase tunicate
XP_001510158  11 tlflmmgLFQLLEENDQLIRCIVEYQNKG-RAAECTQYQHVLHRNLIYLATIADASPTNTQ 70  platypus
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap