Conserved Protein Domain Family
EAF

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pfam09816: EAF (this model, PSSM-Id:370718 is obsolete and has been replaced by 462913)
RNA polymerase II transcription elongation factor
Members of this family act as transcriptional transactivators of ELL and ELL2 elongation activities. Eaf proteins form a stable heterodimer complex with ELL proteins to facilitate the binding of RNA polymerase II to activate transcription elongation. The N-terminus of approx 120 residues is globular and highly conserved.
Statistics
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PSSM-Id: 370718
Aligned: 106 rows
Threshold Bit Score: 58.7927
Created: 3-May-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CBQ72053              11 YPVAVEPSAS---AlfaaantkaathhnlnsassREALPSYVALNFNFKPDSTHDCRRGALFQpg------ssRSVNADW 81  Sporiso...
EER33132               8 YELDISVLLQ---Nastid----------tptstSKDTSENIAIRYGFIPDSMDQSKPLKLYQkdqtcilkalSTEG--- 71  Candida...
EMG49448               8 YELDISVLLQ---Nst-------------------tNDDENIAIRYGFVPDSMDQSKPLKLYQkdqacvlkaaTTDN--- 62  Candida...
EAZ62932               8 YDIDLSALIE---Tpsv-----------------sgNPDENVAVRYGFIPDSMDHTKPLTLYQneqecllrasSTDG--- 64  Scheffe...
EGW32607               8 YEIDLSALLD---Lpp------------------isDDNNNVAIRYGFIPDSMDQTKPIKLYQnkdecilettDGDN--- 63  Spathas...
EEQ39079               8 YDIDLSVLGD--------------------------EDDSSLALRYGFIPDSMDQTRAMSLFQtdrvcvveaaVTERPGI 61  Clavisp...
Q6BSZ0                 8 YEIDLSAFLN---Kdh------------------syERDISLGIRYGFRPDSMDQTSPLTLYQtdqesliqakTVDGS-- 64  Debaryo...
XP_001483043           8 YDLDLSILTQ---Dva---------------------dvSSVGLRYQFVPPTVDRNQPVKAYElgrecilevpLTD---- 59  Meyeroz...
LoveMIT:GQ68_02035T0  12 YDLDISSLLC--------------------------DDSVNLGVRYNFKPDSIDMDYPLELVQessnyilkaeSDPNV-- 63  Komagat...
XP_011276806          12 YELELSDLLRaqfSq-------------------DQNNRGKSPPRNAFRPESVDDTKPVELIRn--------eTGTKQGV 64  Wickerh...
CBQ72053              82 QLEleptetegeaapgsalessggvakrkpahvFTGPQGAV------------------KAYDLVLVW---DEEAKV-YR 139 Sporiso...
EER33132              72 SNKpi---------------------------fFEGIPQRYhrnstnsssstpntnnggNNDSFYLTFn-kELNGNV-VH 122 Candida...
EMG49448              63 DDKpi---------------------------yFEGIPHRYknnts---------inttNNDAYYLTF---DHNADKiIQ 103 Candida...
EAZ62932              65 --Sdi---------------------------vFEGIPQRHkpst-----------snvANDSFYFSYvpkKGDSSS-VQ 103 Scheffe...
EGW32607              64 --Kpi---------------------------lFEGVPQRHks--------------gtANDSYYLSY---IPERPNaVE 97  Spathas...
EEQ39079              62 KSLpi---------------------------iFEGQPQRQrpa-------------snGADSFYLTV-----SDGR-AQ 95  Clavisp...
Q6BSZ0                65 GDNmi---------------------------iFEGNPKRLgps------------knpANETYFLTV---SPTGDNqIV 102 Debaryo...
XP_001483043          60 IQKsi---------------------------lFEGTVLKThpea-----------hnvGAQTYFLSY----SEGKP-VQ 96  Meyeroz...
LoveMIT:GQ68_02035T0  64 RKEpl---------------------------vFEGTLGKT------------------NQHDYLLIY---DDITKR-FQ 94  Komagat...
XP_011276806          65 GFKlksqste-----------------heygidFEGLANQP------------------KDLECILVY---NPVTKS-FE 105 Wickerh...
CBQ72053             140 LDRIASAFSLKYERSK 155 Sporisorium reilianum SRZ2
EER33132             123 LKKLESTIRFNKSRNi 138 Candida tropicalis MYA-3404
EMG49448             104 LKKLDSTIRFNKSRNV 119 Candida maltosa Xu316
EAZ62932             104 LKRLSTSIRFNKSRNV 119 Scheffersomyces stipitis CBS 6054
EGW32607              98 LKKLGTTIRFNKSRNV 113 Spathaspora passalidarum NRRL Y-27907
EEQ39079              96 LRRLSNTVRVNKSRNA 111 Clavispora lusitaniae ATCC 42720
Q6BSZ0               103 LKKLDNTIRVSKSRNV 118 Debaryomyces hansenii
XP_001483043          97 LNRLGRTLKVSKTRNA 112 Meyerozyma guilliermondii ATCC 6260
LoveMIT:GQ68_02035T0  95 MDRFNGVLRMNKSRAP 110 Komagataella phaffii GS115
XP_011276806         106 LQQLDYQLKTNSSRNn 121 Wickerhamomyces ciferrii
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