Conserved Protein Domain Family
Fox-1_C

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pfam12414: Fox-1_C (this model, PSSM-Id:372095 is obsolete and has been replaced by 463568)
Calcitonin gene-related peptide regulator C terminal
This domain family is found in eukaryotes, and is typically between 69 and 99 amino acids in length. The family is found in association with pfam00076. This family is the C terminal of Fox-1, a protein involved in the regulation of calcitonin gene-related peptide to mediate the neuron-specific splicing pattern. Fox-1, with Fox-2, functions to repress exon 4 inclusion.
Statistics
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PSSM-Id: 372095
Aligned: 12 rows
Threshold Bit Score: 71.4184
Created: 1-May-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q642J5       228 VPGFPYPAATa-------AAAA---YRGAHLRGRGRT-VYNTFRAAAPPPHIPAYGG----------------------- 273 zebrafish
9_pfamImport   1 LTGFPYPTAG--------AAVA---YRGAHLRGRGRA-VYNTFRAAPPPPPIPTYGA----------------------- 45 
2_pfamImport   1 IPGFPYPTAAaa----atTAAA---FRGAHLRGRGRT-VYGAVR-AVPPTAIPTYPG----------------------- 48 
XP_021155111 204 VPGFPYPTAAt-------TAAA---FRGAHLRGRGRT-VYGAVR-AVPPTAIPAYPG----------------------- 248 rock pigeon
XP_005001479 208 VTGFPYPTTG--------TAVA---YRGAHLRGRGRA-VYNTFRAAPPPPPIPTYGAaleqtlvkmpvpwaglapcplpp 275 domestic guinea...
XP_011602618 195 VAGFPYPATG--------ATVA---YRGAHLRGRGRA-VYNTFRTAPPPPPIPAYGA----------------------- 239 torafugu
XP_008111769 149 VASIPYPMMAp-------AALA---YRGA-LRGRGRAtIYNPIRAAPAPSPVPAYGS----------------------- 194 green anole
XP_003977690 257 VASFPYPVAT--------PTLA---YRGSALRGRGRA-VYNAIRSAAAPAAVPAFPG----------------------- 301 torafugu
XP_022531235 323 VPGFPYPTAAaaa--aatTAAT---FRGAHLRGRGRP-VYGAVRAAVPQPAIPAYPG----------------------- 373 Mexican tetra
XP_017729906 202 MPGFPYPAAT--------AAAA---YRGAHLRGRGRT-VYNTFRAAAPPPPIPAYGG----------------------- 246 black snub-nose...
XP_011601936 292 VPGFPYPSAAaattaaaaAAAA---FRGAHLRGRGRP-VYSAVRAALPQPAIPAYPG----------------------- 344 torafugu
XP_003964407 318 VPGFPYPSAAaat---taAAAAaaaFRGAHLRGRGRP-VYSAVRAALPQPAIPAYPG----------------------- 370 torafugu
Q642J5       274 ------------------------VVYQDGF-YGAD-IYGGY-----------TAYRYTQ---PATAT----------AA 303 zebrafish
9_pfamImport  46 ------------------------ILYLDNIaYKNN-IAGGY-----------AAYRYAQ---PAAAA----------AT 76 
2_pfamImport  49 ------------------------VLYQDGF-YGTE-LYGGY-----------AAYRYTQlpsPPTSAltalpvppltAR 91 
XP_021155111 249 ------------------------VVYQDGF-YGAD-LYGGY-----------AAYRYAQ---PATATaata--aaaaAA 286 rock pigeon
XP_005001479 276 qqtpepayptspafpplscpfasrVVYQDGF-YGAE-IYGGY-----------AAYRYTQ---PAAAAa--------aAA 331 domestic guinea...
XP_011602618 240 ------------------------VVYQDGF-YGAE-IYGGY-----------AAYRFAQ---PTTTA------------ 267 torafugu
XP_008111769 195 ------------------------VLYPDGL-YGSD-IY-GYp----------AAYRVAQ---TPAAAaa------taAA 228 green anole
XP_003977690 302 ------------------------VVYQDGL-YGAE-VYGGYp----------AAYRVAQ---SASAA----------AA 332 torafugu
XP_022531235 374 ------------------------IVFQDTV-VSSRlPQGGY-----------AAYRYAQ---PTAVAgptaaaaaaaAA 414 Mexican tetra
XP_017729906 247 ------------------------VVYQEPV-YGNKlLQGGY-----------AAYRYAQ---PTPAT----------AA 277 black snub-nose...
XP_011601936 345 ------------------------VVYQDGF-YSAAdLYGGYpaaaaaaaaaaAAYRYTQ---PATVTgat-----paAA 391 torafugu
XP_003964407 371 ------------------------VVYQDGF-YSAAdLYGGYpaaaaaaaaaaAAYRYTQ---PATVTgat-----paAA 417 torafugu
Q642J5       304 AYSDS-YGRVY-A-ADPY 318 zebrafish
9_pfamImport  77 AYSDS-YGRVYtA-ADPY 92 
2_pfamImport  92 MCTDReYGRVY-T-ADPY 107
XP_021155111 287 AYSDG-YGRVY-T-ADPY 301 rock pigeon
XP_005001479 332 AYSDS-YGRVYaA-ADPY 347 domestic guinea pig
XP_011602618 268 AFSDS-YGRVYaT-ADPY 283 torafugu
XP_008111769 229 AYSDG-YGRVYtT-AEPY 244 green anole
XP_003977690 333 TYSDG-YGRVYtTaADPY 349 torafugu
XP_022531235 415 AYSDS-YGRVY-T-ADPY 429 Mexican tetra
XP_017729906 278 AYSDR-NQFVFvA-ADei 293 black snub-nosed monkey
XP_011601936 392 AYSDS-YGRVY-T-TDPY 406 torafugu
XP_003964407 418 AYSDS-YGRVY-T-TDPY 432 torafugu
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