Conserved Protein Domain Family
MMS19_C

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pfam12460: MMS19_C (this model, PSSM-Id:372125 is obsolete and has been replaced by 463594)
RNAPII transcription regulator C-terminal
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription. This C-terminal domain, along with the N-terminal, MMS19_N, form part of a silencing complex in fission yeast that contains Dos2, Rik1, Mms19 and Cdc20 (the catalytic subunit of DNA polymerase-epsilon). This complex regulates RNA polymerase II (RNA Pol II) activity in heterochromatin and is required for DNA replication and heterochromatin assembly.
Statistics
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PSSM-Id: 372125
Aligned: 93 rows
Threshold Bit Score: 197.848
Created: 1-May-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ELR02748       559 PVLLAALPDVLEGGETVAd----------KLAVLQALGDIGSRGRVMDTLLR----RLLSKL--DIVVRANET------- 615  Pseudogymnoa...
EPB86737       521 PALLECLPSLDNPIISES-----------YRDTLDEIQVLGAHPAVFKIIIQ----SILEKV--DFACRHIGKn------ 577  Mucor circin...
EPB91135       531 PILVNLLPDFSSMEDNTSvdi------vpYKLTLATINKLCVPPAIYEATEQ----ELLTKF--LYICSHNQD------- 591  Mucor circin...
EEN44605       518 SKLLQVLENNNPNAMDTNqseqvcakhvtNQYVLNTLAAVSTHPTIVRCTIP----KLLSHL--QALIESCPDq------ 585  Florida lanc...
EDO37103       411 eeniSHLQSDKSHPQ--------------YDQMLNTLSAVCTEEGVVRHVVP----IILDHG--EYLVTGKDLer----- 465  starlet sea ...
XP_004343013   517 TSLSESLTTVTLEQAAA------------RKQLWVILTEISNTPPLLRRTAP----LFLNQL--QTLLASAVAmpmdtst 578  Capsaspora o...
11_pfamImport    1 PKLFAEIATDNCEST--------------YHNALAAVTAISVHDSVARNIIP----VLIKHL--NSLLDCNENqliv--- 57  
EEY67788       646 TASNRNFDSF-------------------FEEALLAITELCRESSIFQATIFllidLCVEKGdgkqsaig---------- 696  Phytophthora...
XP_791246      518 kstilttlwttvqkgESG-----------YQRIVVDMATIVTDTS--DDLSR----SLTSELmvEIAKTELNS------- 573  purple sea u...
XP_018674227   473 qRIVSMLQSNDSTISLSL-----------K---LVAISEIS---------SI----GL--YL--LRIVQ----------- 510  wild Malaysi...
ELR02748       616 -----------QKYGH--LVLAGILYAVEQRQaqsengevamrdE--EGYRSLVDELLRRTAAL------KVNAKKWYVg 674  Pseudogymnoa...
EPB86737       578 ----------nINFVH--DMALTLLKIYKAASk----------dC--EIVVYGRNALLPTVLIE------CMKSVSGNEg 627  Mucor circin...
EPB91135       592 -----------KRYAL--EIISTLLTLVRTKDsdkq-----------pdiKLCSETLLPKLFTS------VISAVMDETa 641  Mucor circin...
EEN44605       586 ----------aTQEAI--ATLDCVYKVVEKTVi----------nD--ANVEYFVDTIVLNLMSM------ALSAAVNTSd 635  Florida lanc...
EDO37103       466 ----------gVLHGKisETLKCLNSIVKGTLqs---------sT--VEPNYYTEVVIYRIIDL------CTQSALQESp 518  starlet sea ...
XP_004343013   579 tsspsaaasssPEQVEfeVVLESVANIVAKGAsqq------qevA--LRPSTLAETILLPVLSLa----fSLSAEPGTLg 646  Capsaspora o...
11_pfamImport   58 --------------drlpHAVSCLNEVIKNKPk-----------H--NETSYLCDLIIVPLINKe----mIKKLS----- 101 
EEY67788       697 ---fceaegdaTRQRHvdCILDAVAKIVEINAgdrtsm-------efcvkASSSASIIFRLLTAv----eTLAARATAss 762  Phytophthora...
XP_791246      574 -----------EQHLVylATLNTLTAHLSs-------------aP--SNLESLLSSVVHPLMKM------VVSATLQSSv 621  purple sea u...
XP_018674227   511 ------------AFEE--AIVSNLRACFEGNLks--------sdVlvPLLQCYSNQVLPRCHTCgnfndiAVQVAVSIW- 567  wild Malaysi...
ELR02748       675 trdletaggKAQPDDTFL-------EVVGRIIMAA---TSGMGFD-EQYWIFERAF-----ALSVAYDDFTaacvavtsp 738  Pseudogymnoa...
EPB86737       628 ---------NWYLDDTLI-------EMFAMIAAIT---TRLSSSS-EQQTSINDMF-----KLFVQGDVSPldqniqids 682  Mucor circin...
EPB91135       642 dp-----tqVIILSDEVS-------EIINLIILAV---VKNLGTS-YQQEYATQAF-----RYFKEKDLDTlglkatpnf 700  Mucor circin...
EEN44605       636 --------eNLLHDTSLL-------EIVAKVLRAV---ARSLPNS-TGKGIVNSTV-----QAFLQGNLAAislntsasf 691  Florida lanc...
EDO37103       519 --------dCPMATPEAL-------ALVCSIVRQV---ISHLAVN-EAEDVLHIIV-----SNFIEGKTPLsaraeqkfa 574  starlet sea ...
XP_004343013   647 --------gVVSTNQSVV-------ETLARIVRNI---VCAASVQdCSSQLSTAVQ-----TAFAALTDPTtspirsvd- 702  Capsaspora o...
11_pfamImport  102 ----------AFKEHNVI-------SQLSSVFGEI---TKDLPIS-KTRDLLENIL-----FPVLFSYLNSesh------ 149 
EEY67788       763 g------ykSGLVDEVKL-------SACVRIFRAV---MQNVSSA-TQQQLVDAVV-----PAFLRTNTSEpasl----- 815  Phytophthora...
XP_791246      622 ea-----gnNPHCCGEVL-------VAMAEVFRTV---IPKLDSS-MGSKLCQCAV-----DVFLHGNLTSleltnpnts 680  purple sea u...
XP_018674227   568 ---------NQIENVAVFrssilmkDVLDQVMMTMkhlVAGCTEE-SQFLILQKAYgslpkTFFIAEPLPCalsqleg-- 635  wild Malaysi...
ELR02748       739 dd----lpdddlsattdIskrvdildaqldllsgpadklhvlTLTKYILATLRRDNRItkpaavivtgpppatlpvkkri 814  Pseudogymnoa...
EPB86737       683 lpif-ghitstssaidiT------------------------LLFTAIISNCCKTVQLp--------------------i 717  Mucor circin...
EPB91135       701 cpl---saqaskaqaacT------------------------QLFATVVASLRKNATVp--------------------i 733  Mucor circin...
EEN44605       692 epl---dvsspwqqtqtV------------------------QLLSAIVCSVARNVDI---------------------- 722  Florida lanc...
EDO37103       575 pl----epsspwqqsqlV------------------------TVLMAAVCSARREVRI---------------------- 604  starlet sea ...
XP_004343013   703 ---------vnaatsrkI------------------------LVASAVLCCGPRELVL---------------------- 727  Capsaspora o...
11_pfamImport  150 ---------------------------------------atiQMINSMICSAPSEafg-------------------qdi 171 
EEY67788       816 ---------------------------------------qfvpLFAAVINSAARDVAL---------------------- 834  Phytophthora...
XP_791246      681 vpfspldprapvhqtqlV------------------------TVLQPIVCSLRRDIHI---------------------- 714  purple sea u...
XP_018674227   636 ----------lqciqdtTlmscr--------------dewifSLFGSVVIALRPQTPL---------------------- 669  wild Malaysi...
ELR02748       815 LTINTTAaaTNLIT------YLTTTACTPSLRSTLLD-------ILSLLINKFA--ALTPAVTAQLLGRFTTLpt----- 874  Pseudogymnoa...
EPB86737       718 PSLSGFM--TNLIQ-------TATQTPSEMRKLALSK-------IAASIINKWLndELLSHVKNLVSESILPTlet---- 777  Mucor circin...
EPB91135       734 QSNESFL--DNIVS-------EALKSTHEKQILAFSR-------IIASIINKWKddDSFQAYLDVLKSRLEQLvl----- 792  Mucor circin...
EEN44605       723 PSISELA--QKLLT-------LSCASDHEPTSLAAAK-------SLSGVVNKWDqgEQLQTFLQETRDCLEQIlsk---- 782  Florida lanc...
EDO37103       605 PRQKELV--PRLQV-------LASGCNHRKTTVAASK-------CLGGIINKMAqgDDLTADLHSLKGQLQNHmd----- 663  starlet sea ...
XP_004343013   728 -SLQSDF--AAMLPki---tLLALHSPDADTRRYCCM-------MAGAIINHLEd-QDLSKH---VETALLPQleqllra 790  Capsaspora o...
11_pfamImport  172 KKVILQL--DKLIN-----------DSSNETVLFLVQ-------MIASIVNKCQegLCLDDILNILMESINSLlv----- 226 
EEY67788       835 PDSSLVI--NRLLElaqsgaTAVSESPPRQLQLVYTDaalsaakSLASIVNKMSdgAEFDALIDLLLSRKLAVvisn--- 909  Phytophthora...
XP_791246      715 PSSKQLM--SSLLH-------IAAHSRAWLASTWAAK-------GLAGGVNKHPagSDLDEVLVEAESLLGQAmss---- 774  purple sea u...
XP_018674227   670 VNVK--------IL------LNLFVVLLLKGNMLAAQ-------ALASMVNKWPadVNKSEISYSLDQAIEEIlks---- 724  wild Malaysi...
ELR02748       875 ---------lpAQEAKLTIQ------------TLTTCTHASLLAGLPVATQLSTALLT---------AL----------- 913  Pseudogymnoa...
EPB86737       778 --------atdTDNKRSTFV------------ILVWIIKALIIRGHRYGFELLDSVIK---------QC----------- 817  Mucor circin...
EPB91135       793 ------------aKSQAALS------------IYIWLAKALVTRAHKKSVDMIDFLIS---------LI----------- 828  Mucor circin...
EEN44605       783 --------tedEKARCRAVA------------VLVWLTKALVIRGHPSGSQFTKTLMA---------LF----------- 822  Florida lanc...
EDO37103       664 ---------gnEEQRWRAVI------------TWLWLTRALVTRSHPMAQEFVQKVLH---------LL----------- 702  starlet sea ...
XP_004343013   791 actaapataaqDQQQRAALA------------LWIWITKALFIRGHALGDRMVSLLLTdcv---rapLL----------- 844  Capsaspora o...
11_pfamImport  227 ---------reGNCESKGLV------------MLTWLTKALVLRGHPSMEKWISRYIQ---------LL----------- 265 
EEY67788       910 -------saesFTVRVAALQ------------IYAWIAKALVIRGHKVHAPVCLRFLCsfltpdgdvNM----------- 959  Phytophthora...
XP_791246      775 --------gqeGSVKQQALM------------AWVLLTKALVMRSHPKATAFLTTLLR---------LL----------- 814  purple sea u...
XP_018674227   725 --------clwTSESSSNFIdrdscfhknvvlGLAWIGKGLLMRGHEKLKEIAMLLLK---------CLvagkyvditpf 787  wild Malaysi...
ELR02748       914 ------------Sl------PAPTGQLAAQAFTHLLAPsp-lLTRRQHALIRPLAQQRLFHTAVPELLSTFSSt-sTSGP 973  Pseudogymnoa...
EPB86737       818 ------------G-------SPELGKYAADSFITLLHQdeliLNKSSHAIVSILFKQRVFTHCFRKLMDGAESvdvRQPE 878  Mucor circin...
EPB91135       829 ------------P-------DAVVGKHASSGFDILVGDdalcLNKQCFANISFLYKQKFMTFALPKLLKNFNA---STED 886  Mucor circin...
EEN44605       823 ------------E-------DEAIGRRAAEGFYVILSDspdvLSKESHANIRLMYKQRFFMENLPALVDGFNQ---ADDG 880  Florida lanc...
EDO37103       703 ------------D-------DVSVGRVAADGFYVIVSDcddvMNQAMHADIKMMYKQRFFMETLPLLLKGFHD---TRPE 760  starlet sea ...
XP_004343013   845 ------------Adva--aaPSSFAQQAAESMHTILTDseevLSKRTRANFRIMYKQRLFTSKSALIVQGYAA---TDDE 907  Capsaspora o...
11_pfamImport  266 ------------S-------EDRLGQEAANGFEVITSSda-vLTVERHAIVRIMYRQRFYQTTISKLMNAFNAt--ETNE 323 
EEY67788       960 ------------EqegddqhAAALRMEVAKTFKLLVSEyldvLNRKCGAFITFLYRQRLFDLVFPVLLEYIRAr--IDEE 1025 Phytophthora...
XP_791246      815 ------------E-------DAELGAQVPQTLGMLLEDmrdvLSEGLHADVKIMYKQRVFLQALPFVMALFNK---DDLR 872  purple sea u...
XP_018674227   788 qqhengkdagqdA-------SSPLATFAADAFHVFLSDsedcLNKKFHATIRPLYKQRFFSSMLPILLSSIKE---SDPS 857  wild Malaysi...
ELR02748       974 TKTNVLV-ALSGLLAHAPEEYITPFIPSLIPPLLQ-----SL-DSSPASTKKASIAVLRSAATSS--PRALQE--HDAAL 1042 Pseudogymnoa...
EPB86737       879 LQVNYLL-ALIHVLQNIPSQVATNELHRLMLPIIV-----AL-SSHDSNLIKSTLTVAQDIVPNA--QDLVVQ--HLGSF 947  Mucor circin...
EPB91135       887 EKLNFLI-AIAYLLKNVPRSILVDELPPLVPLLIE-----SM-SFPDTVLKLSTLDLFQFSLQEA--TDIMAK--HIITL 955  Mucor circin...
EEN44605       881 RKQSFLC-AVSHLLTFIPRQVLLGALPPLVPLLVQ-----SL-LGEDPSLQVSTLEMFSSLVQEA--PQVISK--NIDAL 949  Florida lanc...
EDO37103       761 CKYLYLC-ALSHLLQWIPKQVLLTEIPTLMPMLIQ-----AL-SRDEPSLLLSTLQTLYSLVFDA--PEVISR--QVTSL 829  starlet sea ...
XP_004343013   908 HKQFYLT-ALSHMLQNVPKQVLLTELPSLLPLLFQ-----SL-SHANVGLRLSTINSVYLLLFDA--PALLAS--HTPTL 976  Capsaspora o...
11_pfamImport  324 IKSNHLI-AILHQLQHLPQQVLFEEINSLIPLLSK-----GLiSYENINLLLTTLTTLKNLINTF--PLSLTT--HITTL 393 
EEY67788      1026 SSVAALV-AFAQVIAHSPKAIYLPHLAQIFPLMVQ-----AL-NTDDRELGSAAIQTFKPLLL----ESVESAkpFLKDV 1094 Phytophthora...
XP_791246      873 TKAI--T-ALCHLLPSIPRPVLLAELPPIIPRLVQ-----SL-RVTDPRPTLPILDILESLLEETl-PSLVDQ---ADTL 939  purple sea u...
XP_018674227   858 SKKVVLYrAFGHVISDTPLAAVVGEAKKIVPTLADalamlSL-DILNKDLIYSLLLVVSGILMDNngKAIVLE--NVHTI 934  wild Malaysi...
ELR02748      1043 VKRLLAC 1049 Pseudogymnoascus destructans 20631-21
EPB86737       948 IHALLRL 954  Mucor circinelloides f. circinelloides 1006PhL
EPB91135       956 LPAFtsl 962  Mucor circinelloides f. circinelloides 1006PhL
EEN44605       950 IPQLLEL 956  Florida lancelet
EDO37103       830 IPNFLEL 836  starlet sea anemone
XP_004343013   977 IKHMMAL 983  Capsaspora owczarzaki ATCC 30864
11_pfamImport  394 IPHFLRI 400 
EEY67788      1095 FPGLLKq 1101 Phytophthora infestans T30-4
XP_791246      940 LPTLLEL 946  purple sea urchin
XP_018674227   935 ISLLIKL 941  wild Malaysian banana
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