5DOQ


Conserved Protein Domain Family
Cyt_bd_oxida_II
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pfam02322: Cyt_bd_oxida_II (this model, PSSM-Id:376764 is obsolete and has been replaced by 460532)
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Cytochrome bd terminal oxidase subunit II
This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.
Links
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Statistics
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PSSM-Id: 376764
Aligned: 692 rows
Threshold Bit Score: 84.4446
Created: 19-Jun-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
5DOQ_B               3 LEVIGISVLWLFLFGYIIVASIDFGAGFFSvysHWA-----N-QqhiLHRIIQRYLSPVWEVTNVFLVFFFVGIVGFFPK 76  Geobacillus
jgi:Psed_6416        1 MSTAVAVVLLVAVIAYAVLGGADFGAGFWD---LTAggpqrGaR---PRDLVERAIGPVWEANHVWLIFILVILWTSFPE 74  Pseudonoc...
BAL88511             1 MSVTVAAILVLALTLYACTGIADYGAGFWD---LTAggrdrGrL---PRSLIDNAVTPVWEANHVWLIYVLVLCWTGFGS 74  Actinopla...
CeBiTec:B446_21220   2 IAGVIAVFLLLVIAAYACGGGTDYGAGFWD---LTAggaerGeR---PRRLIDHAMEPVWEVNNVWLIFVLVVMWTGFPV 75  Streptomy...
Q82LT6               2 IEDVVAWVLLAVVAAYACAGGADYGAGFWD---LVAggperGkR---PRWLIDHAMEPVWETNNVWLIFILVIMWTGFPV 75  Streptomy...
EDY53501             1 MADFIAWVLVLAIAAYACAGGTDYGAGFWD---LLAggaerGkR---SRWLIDHAMAPVWEVNNVWLIFILVIMWTGFPT 74  Streptomy...
CeBiTec:B446_31565   1 MTDLIAVVLFIGVIAYALFGGADYGAGFWD---LTAggaarGrP---VRELVNVSVSPVWEANHTWLIFCFVTIWTAFPQ 74  Streptomy...
mmlSJTU:SHJG_0558    1 MADLVAVFLFIGVIAYCVLGGADFGAGFWD---LIAggagrGrE---PRHLIDDSLAPVWEANHTWLIYCLVMLWSGFPP 74  Streptomy...
jgi:Cwoe_3724        3 LYDVPLIFALVGLILYVVLAGADFGAGFWQ---LAAgrgerGsR---IREHAHASMAPVWEANHVWLVFILVIAWTCYPE 76  Conexibac...
BGI:SBI_02165        2 LANLTLGVMWIGLTCYALFGGADFGAGLWD---LLAgrsgpGaP---RRALIEHTIGPVWEANHVWLIFVVVLLWAGFSP 75  Streptomy...

5DOQ_B              77 TAYYYGSILLVPASIAIVLLAIRGSYYAFHTYG-E-TE-RNWYLLAYGLTGLFIPASLSIVLtiseGGFVEENAAgvald 153 Geobacillus
jgi:Psed_6416       75 AYASITLTLFVPMMIAALGIVLRGASFAFRKTVvAlRY-RRIFGAAFAASSVLVPYCMGAIV----GGIASGRVPaggva 149 Pseudonoc...
BAL88511            75 TFASVMSTLYIPLALALLGIVLRAAGFAMSKDAa-rARmRHLAGWLFGVGSFLTPFCLGTAV----GAVLTGRIPvgnaa 149 Actinopla...
CeBiTec:B446_21220  76 FFQQVFTTMWLPLTLAALGIVLRGAGFALRKPMrRlVG-RRLYGAVFAVASLLTPFFLGAAV----GGVASGRVsat--t 148 Streptomy...
Q82LT6              76 LFQTVFTAMWLPLALAAVGLVLRGAGFALRKPTrRlAR-RRIVGAVFALSSLLTPFFLGAAV----GGLATGRVapg--t 148 Streptomy...
EDY53501            75 LFQTVFSAMWLPLALAAVGLVLRGAGFALRKPTrRlAQ-QRIYGAVFAISSLLTPFFFGAVL----GGIASGRVkpg--t 147 Streptomy...
CeBiTec:B446_31565  75 AFTAMTTTLYIPLGLAALGIVARGSGFAFRHALaQgRG-ELVSGVAFACSSVLTPFFFGAVA----GGIASGRVPsag-h 148 Streptomy...
mmlSJTU:SHJG_0558   75 AFAALTSTLYLPLGIAALGIVLRGAGFAFRKASiRtPE-QRVYGAAFAFSSVLTPYCFGSIA----GALASGRVParg-d 148 Streptomy...
jgi:Cwoe_3724       77 AFASIASTLSIPLFIAAIGIVFRGAAYALRAGTsQrRE-LRVIDTVFAVSSILTPFALGTVI----GAIASGRVPvgnaa 151 Conexibac...
BGI:SBI_02165       76 VFAAVMSTLYIPLTLTALGIIARGAAFAFRKAStElWQ-KRLFGACFALSSVLTPFFLGTVA----GGVASGRVPpglaa 150 Streptomy...

5DOQ_B             154 ygKLFa--SPLSWSVVLLSVTSVLYISAVFLTYY-A-DaaGD-EQARAllRRYALLWS-GPTMLSALLIIyqlryhnpe- 226 Geobacillus
jgi:Psed_6416      150 gdPARswiNPTSVVGGVLAVAAAAYLAAVYLVQDaRrLd-EPdMAQHF--RRRALVSAvAVAVIAAAGAFvlradaghlf 226 Pseudonoc...
BAL88511           150 gdEITswlNPSSILAGLLTVAVGAYVSAVYLLAEaHrHg-TAaLHGYF--RFRARAAGvTGLLLGLGLLLalhvderqmf 226 Actinopla...
CeBiTec:B446_21220 149 taSTDawaNPTSLLFGLLAIACSATLGAVFLAADaRrFe-APdLDRYF--RPRALAALgCVAVLAIVTLVvthgdaphvw 225 Streptomy...
Q82LT6             149 kaSADawaNGTSVIAGLLTIAATAFLGAVFLTADaRrFd-AAdLVGYF--RLRAWCSLgVIAVLAVVGLAvthddaryvh 225 Streptomy...
EDY53501           148 taSTDawaNGTSVLVGLLAIAATAFLGAVFLCSDaLrFg-ADdLVDYF--RVRVLIAFaVVVVLALIALPvthndaryvw 224 Streptomy...
CeBiTec:B446_31565 149 gdALSswlNPTSVLGGVLAVTVCAYLAAVFLTGQaRrRa-DTpLEEAF--RHRAFAAGiVAGLVALVGVFvlradsprlf 225 Streptomy...
mmlSJTU:SHJG_0558  149 gdPVTswlNPTSALGGVLAVLACAYLAATYLTVAaGrHg-DPhLFRYF--RDRALAAGvATGAVSIAGIFvlradaprlf 225 Streptomy...
jgi:Cwoe_3724      152 gdAWTswtNTTSLTIGVLAVVTSAYIAAVYLAADaArDg-DAeMEEAF--RHRALGTGlVAGVVAVAGLLvlrddvrsly 228 Conexibac...
BGI:SBI_02165      151 gdLITswlNPTSLLGGVLAVLTCAHLAAVYLCAEtErLg-QPeLGAWF--RSRALISGlAAGAVALAGIAilhadaprlf 227 Streptomy...

5DOQ_B             227 --hydnlwnvA--WMlVISFLFFVITV----WLLgRQrrfgwafiALLFQYAFAFYAYGISHYPYLLYPYLTIYDGFTNE 298 Geobacillus
jgi:Psed_6416      227 -dgltsralpAviVSgVCGVGALVLLHrdasRGA-RA--------LGVVAVAAAVAAWGLAQSPYVLPESLTFSAAAAPT 296 Pseudonoc...
BAL88511           227 -drvvqrgwpLllLSlALLAGSFRLAAgvrvWRM-RL--------VAAGGIAALVGAWAVAQYPYLLPFSLTVQDGAAGP 296 Actinopla...
CeBiTec:B446_21220 226 hglthgaglvFvvIAvVATAATVWLLTrasgAWS-RV--------AAVGMVASAVIAWGTAQRPYLIPTSLTIAAGAGAP 296 Streptomy...
Q82LT6             226 dgltggiglaLvlVAvVSALATAGLLYrtatGWA-RI--------TAVGSVALVVVAWGLAQRPYLIPTSLTVSEAAGAS 296 Streptomy...
EDY53501           225 dgltgglgllLviLAaVCGLATVLLVWrrsyGWS-RH--------TSVASVALVVGAWGCAQRPYLLPESLTVAEAAGAA 295 Streptomy...
CeBiTec:B446_31565 226 -hqlstvgapLlaVSgLCGLAALLLLRkggpPVV-RT--------LAAIAITTVVAGWGVAQYPYLLGTHLTIQQAAAPP 295 Streptomy...
mmlSJTU:SHJG_0558  226 -hqlshralpLalLAaLCGLLGLALLRaertRGL-RA--------TAAAAVALIVGGWGVSQYPYLLGTHLPVQDAAAPH 295 Streptomy...
jgi:Cwoe_3724      229 delvsgdglpAliVSaLAGIGTLALVArrsyEWA-RY--------SAALAVAAVIAGWALAQSPVLLPG-LTVEQAAASH 298 Conexibac...
BGI:SBI_02165      228 -hglthralpLvvLSaCAGLAALALLrr-gpGLA-RP--------LAALAVAAILWAWGVAQYPAMLVPGVTVGDAASTH 296 Streptomy...

5DOQ_B             299 TMAMALIVAFIAG 311 Geobacillus
jgi:Psed_6416      297 GTLTAVLVAAVLA 309 Pseudonocardia dioxanivorans CB1190
BAL88511           297 ATLRWLLIWFVGA 309 Actinoplanes missouriensis 431
CeBiTec:B446_21220 297 TTLRWLGIVIIVA 309 Streptomyces collinus Tu 365
Q82LT6             297 TTLRWLMLVTVIA 309 Streptomyces avermitilis
EDY53501           296 HTLRWLVIVTAVA 308 Streptomyces sviceus ATCC 29083
CeBiTec:B446_31565 296 ATLWVLIAVSFVA 308 Streptomyces collinus Tu 365
mmlSJTU:SHJG_0558  296 ATLAVLVGVACAA 308 Streptomyces hygroscopicus subsp. jinggangensis 5008
jgi:Cwoe_3724      299 DTLVAVVVAVLAG 311 Conexibacter woesei DSM 14684
BGI:SBI_02165      297 PVLIACLVSLAVG 309 Streptomyces bingchenggensis BCW-1
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