2MVW


Conserved Protein Domain Family
Bbox1_TRIM19_C-V

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cd19804: Bbox1_TRIM19_C-V 
B-box-type 1 zinc finger found in promyelocytic leukemia protein (PML) and similar proteins
Protein PML, also known as RING finger protein 71 (RNF71) or tripartite motif-containing protein 19 (TRIM19), is predominantly a nuclear protein with a broad intrinsic antiviral activity. It is the eponymous component of PML nuclear bodies (PML NBs) and has been implicated in a wide variety of cellular processes, including DNA damage signaling, apoptosis, and transcription. PML interferes with the replication of many unrelated viruses, including human immunodeficiency virus 1 (HIV-1), human foamy virus (HFV), poliovirus, influenza virus, rabies virus, EMCV, adeno-associated virus (AAV), and vesicular stomatitis virus (VSV). It also selectively interacts with misfolded proteins through distinct substrate recognition sites, and conjugates these proteins with the small ubiquitin-like modifiers (SUMOs) through its SUMO ligase activity. PML belongs to the C-V subclass of the TRIM (tripartite motif) family of proteins that are defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a RING finger, Bbox1 and Bbox2, and a coiled coil region, as well as an uncharacterized region positioned C-terminal to the RBCC domain. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif.
Statistics
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PSSM-Id: 380862
Aligned: 10 rows
Threshold Bit Score: 48.2249
Created: 5-Sep-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding sitehomodimer
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C C C H HClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #  #         #  #     #  #    #                #       
2MVW_A          9 QAVCTRCKES--ADFWCFECEQL-LCAKCFEA-HQWF-----------LKHEARPLAE 51   human
XP_004943756   92 ELLCDNCGSS--SEYWCPECKEF-LCTKCFET-HQRYvk--------rENHEAKRVQD 137  chicken
P29590        126 QAVCTRCKES--ADFWCFECEQL-LCAKCFEA-HQWF-----------LKHEARPLAE 168  human
XP_026540293   82 VLFCNLCKEE--AEFWCSECSEF-LCRKCYEA-HQWYlk--------qKSHESQRLAD 127  mainland tiger snake
XP_012788924  104 RAACTRCKNS--ADFWCSQCEKL-YCPKCYET-HGYF-----------LKHEAQRLEE 146  European shrew
XP_002741510   98 EIMCQNCSDEscAESWCHQCSLF-LCEKCSDA-HKRLap--------yNRHMQETLAG 145  Saccoglossus kowalevskii
GAQ84961      148 ELMCEVCEHRe-ATMWCGDCGDIfYCRKCADAdHSRGk---------rKEHLPLRTAE 195  Klebsormidium nitens
XP_015493883  289 GPCCGRCRAEe-ALVWCEECEEF-LCGRCSEE-HRWWhk--------kKEHRFLKVEE 335  Great Tit
SCQ16721      247 SYLCNICSFNe-AVIYCNDCVEY-LCRQCCESiHEMDivnki-gykneKNHNYYEIEK 301  Plasmodium ovale
XP_026309606  305 SYICNICSENe-AVVYCDDCVEY-LCSECCNIiHEEEtlktvidknieKKHNFYKIDK 360  Ugandan red Colobus

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