4P0O,4P0F


Conserved Protein Domain Family
serpin42Da-like

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cd19601: serpin42Da-like 
Click on image for an interactive view with Cn3D
serpins similar to Drosophila melanogaster Serpin 42Da
This subfamily is composed mainly of insect serpins, including Drosophila melanogaster serpin 42Da. Serpins in insects function within development, wound healing and immunity. Serpin 42Da, previously serpin 4, is a serine protease inhibitor that is capable of remarkable functional diversity through the alternative splicing of four different reactive center loop exons. Insect serpins from stink bug, alfalfa leafcutting bee, red flour beetle, house fly, and brown planthopper are also included in this subfamily. SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia. A classification based on evolutionary relatedness has resulted in the assignment of serpins to 16 clades designated A-P along with some orphans.
Statistics
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PSSM-Id: 381065
Aligned: 114 rows
Threshold Bit Score: 310.214
Created: 5-Jun-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
reactive center
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:reactive center loop (RCL)
Evidence:
  • Comment:depending on the conformational state, the RC loop is surface accessible in the active form or buried and inserted as the central beta strand in the inactive form.
  • Structure:4P0O_A: Drosophila melanogaster cleaved serpin 42Da RCL, inserted
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
4P0O_A        13 RLALFSINVYGklsgqk--pgeniVFSPFSIQTCAAMARLGaenETATQLDQGLglass-dpeqiAHSFHQVLAAyqd-- 87  fruit fly
ODM93513      10 ANNDFTADLYKalfpeh--ssgnlIFSPFSLNAVLGMVGLGakgNTRDEIFRGLrften-seeaiAKSYHSVISGfqkam 86  Orchesella cincta
ODN00065      39 SGNLFAESIFQeilggqslsernvLISPLSISIGLSMLREGasgKTLEEITNGLrinkdlndedvRNGFTELISAfkddr 118 Orchesella cincta
BAL72193      38 PVNRFTNKLYRvvtkan--psenvIMSPFSVHSLLSMLTLGtrsHTEIELLKALgyrd---itylTESYRNVLPLlkti- 111 Hydropsyche ang...
ODM99798      42 GNMAFGSDLYDvlrks---skdnlIVSPISVATVMAMLQAGargKTAEAIRKTMkfpe---ddqlNKGYQALLQLmksd- 114 Orchesella cincta
ODM95876      32 DNNAVSLKAFQtlwns---nkgslIASPFSLRTMMAMLMAGargNTREQIKSVMnfpad--eeklFTTYQEYIHQlnsp- 105 Orchesella cincta
XP_014292346  32 STNQFAFDLYKavqsh----senvVVSPISLQIILALMQQGarnTTTAEIAGVLqhsvp--nallLEGYKSLITDlrs-- 103 brown marmorate...
AGM71678      36 ESNKFAFDLYLalrkp----lenmMVSPISVQILLALVYTGaggNTATEMAKVLqipdk--vedvLNRYKELIEYled-- 107 Panstrongylus m...
XP_014276799  11 STNLFSLELYQalrkd----genlIFSPIGLQILIAMTLEGadgKTANEIAKVLhhskn--dkeiLEGYKAMINSlvh-- 82  brown marmorate...
XP_014251638  23 GSNKFAVDFYKsvkdd----ssnlVCSPISLQIALAMTYAGaagNTAKEMKDVMhfpds--lkttLEGHKALLDSlqd-- 94  bed bug
Feature 1                                                                                        
4P0O_A        88 ----sqiLRIANKIFVmdgyqlrqEFDQLLSKQFlsAAQSVDFs---kNVQAAATINNWVEQrtnhlikdlvpadvlnse 160 fruit fly
ODM93513      87 s-petftLLTANRVYSqagfglnqAYVNLIKDHFlaDFEQLDFstsenCKAAAATINKWVESttnnkikdlisedslnsl 165 Orchesella cincta
ODN00065     119 nndedvrLQLANRVYVgqvypikqSFLQTARSHFfaDAEQVNFg---dMEAAAFTVNRWVQQatrnrikdvivpsmltnq 195 Orchesella cincta
BAL72193     112 ---ngavINMASKIYAaydlklnsQFLIAAQEVFsaSASNIDFn---dNKAASATINGWVETqtnnkindlippsvidpn 185 Hydropsyche ang...
ODM99798     115 ---dsftLEMANRIYPaegfklngDFANTLKTYFaaDPQQLNYk---qPETAARTINDFVSAsthdrikdligpsdlddl 188 Orchesella cincta
ODM95876     106 ---sevkTEVASRIFLkdgylvqeNFQNILKHYFqsPLQQISFd---kPKKAAEEINNFVSSktnhriqkivdssdltnq 179 Orchesella cincta
XP_014292346 104 -----pvLKIVTKMFIektskvfpDFQSIASNYFlsEIRGLDFkg--nPEGSRVKINDWIEEhtydkikdlfpsgsltss 176 brown marmorate...
AGM71678     108 -----spLNLGLKMFLektlavkpEFQERASMYFrsKVSSVNFia--nPEETRKEINQWVEQktnnkikyllsegtvdsl 180 Panstrongylus m...
XP_014276799  83 -----pyLETATRMYVentleikkNFKSLTSEYFqsEINPQDFnn--nPQGSRRDINKWAEEktnhkiidllpqgsidad 155 brown marmorate...
XP_014251638  95 -----pvLKVASKLYLddkfqvkqAYQDNVVKYFnsEVENVPFgt--dSTKSAATINQWVEEktnkkitnlitpdsispl 167 bed bug
Feature 1                                                                                        
4P0O_A       161 sRLVLVNAIHFKGTWQHQFakhlTRPDTFHLdgertVQVPMMSLKe--rFRYADLpaldAMALELPYKds-----dLSML 233 fruit fly
ODM93513     166 tRLVLVNGIYFKGLWEHQFkpdnTSKAQFRTsesnnVEVDMMYIQe--kFPYAELpeldAEAVALPYKgg-----rLSMV 238 Orchesella cincta
ODN00065     196 tAMILVNAIHFKGQWKYPFdpdnTREERFKTlsgqeLPVKMMQLDrprkMKFAKLpelkSSAVALPYTsq-----rYSFV 270 Orchesella cincta
BAL72193     186 tKMVLVNAIYFKGLWKKPFdpkrTLDVKFTTitgseEDIQMMYQEd--kFLYGSFpdlrAQVVELYYEqq-----dVSMV 258 Hydropsyche ang...
ODM99798     189 tRLVLVNAIYFKGTWKNQFpkddTTKMDFYVsendtIKVDMMRLEt--eMSYGENreldAKIVALPYKgd-----rLSMV 261 Orchesella cincta
ODM95876     180 tRMVLVNTLYFKGAWENPFpttsTRRMPFFLdetrnVTVDMMRLEt--yYRAVDIkqldCKAVLIPYQktkkeedtFQMV 257 Orchesella cincta
XP_014292346 177 tRLVLANAVYLKALWKYPFdkmfTREGQFFIssdevVTVQMMALVqe-sLPHMYSiklkSQMIELPYKee-----gYRMV 250 brown marmorate...
AGM71678     181 tRMLLTTAIYFEANWATQFnpslTKYGDFHVtpeenVGVKLIFNDh--iFPFNHLpelkAKILELPYSne-----eFKMV 253 Panstrongylus m...
XP_014276799 156 aKLIMINAIYFYAQWKSKFekknTVEMNFYVtpkktVTVNMMSTNk--pLVFMENqkldAKIVKLSFLde-----aFSMI 228 brown marmorate...
XP_014251638 168 tKLVLVNAVHFKAKWKDAFsekfTKDADFYVtkekkVTVKMMYQSg--hFNYANIeelkASVVELPYEgd-----kFRMM 240 bed bug
Feature 1                                                                                        
4P0O_A       234 IVLPNTktGLPALEEKlr-----ltTLSQITqslyetKVALKLPRFKAEFQV--ELSEVFQKLGmsrmfsdqaef----- 301 fruit fly
ODM93513     239 IVLPRAvdGLSKLQESigsilqggkSLVSDRltk-tdKIELSLPKFKIEATLg-NLTDVLQALGikamfsippadf---- 312 Orchesella cincta
ODN00065     271 ILLPDPevNLIDVERGlk-----dgMLAAIPsrmrstSVDVRMPKLLLESSIdlIASKSLENLGmesmstefaef----- 340 Orchesella cincta
BAL72193     259 IVLPDDanNFSNVEKTlst----knIFSDLLnemsfeKIYLGVPKFKIELTL--DLTESLPHVGitsifnsnadl----- 327 Hydropsyche ang...
ODM99798     262 ILLPNKrtGLAEMEDKlk-----niPLEQILdglrerKVQLFLPKFKLESTI--DLKEPLTALGagdifsdnadls---- 330 Orchesella cincta
ODM95876     258 ILLPNKksGLASLEKGlt-----dfGLVDQVfnvrprNIELRMPRFNIESSL--ELIEPLKQMGitdvfdenksdlggip 330 Orchesella cincta
XP_014292346 251 IILPDDynGLAALESKlt-----ytDFFTEAsklvrkEIDVFLPRFKVEESM--DLAEILRKMGmptafsnsad------ 317 brown marmorate...
AGM71678     254 IMLPDEitGLPELENKls-----tlNYTEILrslhkvTVNVTLPQFTIGKTI--YLKKILKQLGmkdlfdqska------ 320 Panstrongylus m...
XP_014276799 229 IILPNKmdGLPAMENKlk-----svNLAEVIsshqyqTVNLMLPRFKIEKTI--DVSDWLMQHTpivfsdkanl------ 295 brown marmorate...
XP_014251638 241 IILPNEidGLKDVEERlk-----atTLTDIFsklsniKLDLHLPRFKIEKTL--ELTKTLEEMGmkdlfstkan------ 307 bed bug
Feature 1                                        ############             ######       ###       
4P0O_A       302 ------gkmlqspeplkVSAIIHKAFIEVNeeGTEAAAATGMAVrrkra---imspeEPIEFFa------DHPFTYVLVH 366 fruit fly
ODM93513     313 -----sgipegenpglfVSSVVQKAFIEVNeeGAEAAAATGAVMmmr-------clpITIPFVv------DRPFYYQIVD 374 Orchesella cincta
ODN00065     341 -------grlseeeglrITNVIHKAFLEVNeaGSEAAAASAFIAqarsl---diepeNAVKFIv------DRPFIAYIFD 404 Orchesella cincta
BAL72193     328 ------sgllknvrnlaVTDAIHKAFIEVDefGTTAAAATAVVVglg--------atRYPVFIc------DRPFIFYIIE 387 Hydropsyche ang...
ODM99798     331 ------gisqdgkeqlyVSKAVQKAFIEVNeeGSEAAGKIIRKRsl---------deSPRVIV-------DHSCIYGIVS 388 Orchesella cincta
ODM95876     331 tvskattkedkkenqlyVSKVVQKAFLTVDeaGSEAGAATLSVVfvpl-----sigpPVEEVIt-----vNRPFLGFIRD 400 Orchesella cincta
XP_014292346 318 -------fsrisnealkIDKVIQKALIEVTeeGTEVAIGSAFSVql---------vsLPRRVRc------NHPFIYMILK 375 brown marmorate...
AGM71678     321 -------nldgiaenlyATSAIQKAFISLNeeGTNAAAAAALNLavqptyrisrsvtSTYSFTg------NHPFLFIFSK 387 Panstrongylus m...
XP_014276799 296 --------sgitdgllsISKVVQKAFIEVNeaGAEAAATTGIVV-------------MPRSRTvaqemkcDHPFFFQIIK 354 brown marmorate...
XP_014251638 308 -------ltnmsdedlrVSKVIQKAFIDVNeeGTEAAAATGVIIccr-------mlqINLEFIc------NHPFIYAIFA 367 bed bug
Feature 1                             
4P0O_A       367 Qkd-----------lPLFWGS 376 fruit fly
ODM93513     375 Hang---------elVLFSGH 386 Orchesella cincta
ODN00065     405 Sit----------rsILFVAR 415 Orchesella cincta
BAL72193     388 Kql----------gkILFVGK 398 Hydropsyche angustipennis
ODM99798     389 TkslvdnasrdidnaLLFYGR 409 Orchesella cincta
ODM95876     401 Art----------ktILFTFK 411 Orchesella cincta
XP_014292346 376 Gn------------tILFVGR 384 brown marmorated stink bug
AGM71678     388 Kd------------vILFLGK 396 Panstrongylus megistus
XP_014276799 355 Dd------------lTLFRGA 363 brown marmorated stink bug
XP_014251638 368 Ns------------sLMFTGK 376 bed bug

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