3H5C,5CDX,2OL2,5HGC,1QMN,1QLP,4X30,4IF8,2VDX


Conserved Protein Domain Family
serpinA

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cd19957: serpinA 
Click on image for an interactive view with Cn3D
serpin family A
The clade A of the serpin superfamily includes the classical serine proteinase inhibitors, alpha-1-antitrypsin and alpha-1-antichymotrypsin, protein C inhibitor, kallistatin, and non-inhibitory serpins, like corticosteroid and thyroxin binding globulins. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia. A classification based on evolutionary relatedness has resulted in the assignment of serpins to 16 clades designated A-P along with some orphans.
Statistics
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PSSM-Id: 381073
Aligned: 32 rows
Threshold Bit Score: 437.799
Created: 3-Dec-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
reactive center
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:reactive center loop (RCL)
Evidence:
  • Comment:depending on the conformational state, the RC loop is surface accessible in the active form or buried and inserted as the central beta strand in the inactive form.
  • Structure:1QLP_A; Human alpha-1-antitrypsin, active conformation-loop out; P1-P1' cleavage site: Met-Ser.
    View structure with Cn3D
  • Structure:1QMN_A; Human alpha1-antichymotrypsin serpin delta form-natural occurring mutant, L-55-P.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
3H5C_A        57 ETSNFGFSLLRkismr-------hdgnmVFSPFGMSLAMTGLmlgatgPTETQIKRGlhlqalkptkpgLLPSLFKGLRE 129  human
5HGC_A        14 NNADFAFQFFRevtqea------pnkniFYSPVSISTAFAMLalgarsATQSQILEGlafnlteiqekeIHEGFHNLIHM 87   zebra finch
1QLP_A        29 NLAEFAFSLYRqlahqs------nstniFFSPVSIATAFAMLslgtkaDTHDEILEGlnfnlteipeaqIHEGFQELLRT 102  human
4IF8_A        51 QNMDLGFKLLKklafyn------pgrniFLSPLSISTAFSMLclgaqdSTLDEIKQGfnfrk--mpekdLHEGFHYIIHE 122  human
OCT68274      42 SNMNFAVNIYKqvassaltekksqpkniFFSPVSIATSLAMLalgakaETRNQILNSlapketriqedkIHNAFRHFLQV 121  African clawed...
XP_018414893  47 GNSEFAINFFKhvtsmasqgkastptnvVFSPLSISSTFSMLmlgsgsKTHQEIWEGlrlnnthceekeVHRAYSNLLQM 126  Nanorana parkeri
Q00387        71 ENSDFSVNLFNqlstesk---rsprkniFFSPISISAAFYMLalgaksETHQQILKGlsfnkkklsesqVHEAFKRLIED 147  African clawed...
XP_018414894  56 AYMNFAVQFYKfvsmrsa----gappnlFFSPLSIYTTLSMLalgaqsTTRMEILQAmglndt-ktnqeLHECFRQFLQR 130  Nanorana parkeri
P20848        56 NVTDLAFDLYKswliy-------hnqhvLVTPTSVAMAFRMLslgtkaDTRTEILEGlnvnltetpeakIHECFQQVLQA 128  human
XP_014348700 601 ANSDFAIRFYNkvlscpt----ratkniFFSPISISTALSMLslgaksSTLHQLHEGlgfnttelsedeIHKAFEHLILM 676  coelacanth
Feature 1                                                                                        
3H5C_A       130 tlsrnlelglTQGSFAFIhkdfdvkeTFFNLSKryfdteCVPMnfrnasQAKRLMNHYInketrgkipklfdeinpetKL 209  human
5HGC_A        88 lnhpeggvqlNMMNAIFVtaalallrKFLDDAKalyqleAFTTdfnkptEAEKQINDYIerkthgkitnlvkdmdpqtVM 167  zebra finch
1QLP_A       103 lnqpdsqlqlTTGNGLFLseglklvdKFLEDVKklyhseAFTVnfgdteEAKKQINDYVekgtqgkivdlvkeldrdtVF 182  human
4IF8_A       123 ltqktqdlklSIGNTLFIdqrlqpqrKFLEDAKnfysaeTILTnfqnleMAQKQINDFIsqkthgkinnlienidpgtVM 202  human
OCT68274     122 lnkpkkdlkiTIGNAAFVedelnilkSFANEAEsyyqadVFPTnfknpkEAERQINNYVknktngkikelvrgpstetNL 201  African clawed...
XP_018414893 127 lnepksslrvDISNAIFLqdtltllkNFEDSVQdlyhaeIRKTnltdpqKAKEEINEYVknktegkieelvkdlskdsNM 206  Nanorana parkeri
Q00387       148 snnpmkahqfTIGNALFVeqtvnilkGFEENVKhyyqagVFPMnfkdpdNAKKQLNNYVkdkthgviqemireldsntEM 227  African clawed...
XP_018414894 131 vtqqikevefKLGNEIFIdrsadifpQFQQNVSyyynvsVETInfsdpqGAEKIINTLVsnrthnkiqnmvknldpkiLM 210  Nanorana parkeri
P20848       129 lsrpdtrlqlTTGSSLFVnksmklvdTFLEDTKklyhseASSInfrdteEAKEQINNYVekrtgrkvvdlvkhlkkdtSL 208  human
XP_014348700 677 lnkdhnelqiNTGNVIYLnegfepiqKFIDDAKlyydaeVSNVdfqkseETMQKINAHVknqthgkiedlikdldndtIM 756  coelacanth
Feature 1                                                                                        
3H5C_A       210 ILVDYILFKGKWLTPFdpvfTEVDTFHLdkyktIKVPMMYGAgkfASTFDknfrCHVLKLPYQgnATMLVVLMEKmgdhl 289  human
5HGC_A       168 LLASFVYFKGSWEKPFeaehTEEREFFVdaettVKVPMMYQMgrfDFYFDeelsCTVVRLHYNgsATAFLVLPAKgkmkq 247  zebra finch
1QLP_A       183 ALVNYIFFKGKWERPFevkdTEEEDFHVdqvttVKVPMMKRLgmfNIQHCkklsSWVLLMKYLgnATAIFFLPDEgklqh 262  human
4IF8_A       203 LLANYIFFRARWKHEFdpnvTKEEDFFLeknssVKVPMMFRSgiyQVGYDdklsCTILEIPYQknITAIFILPDEgklkh 282  human
OCT68274     202 LLVNYILFKGEWEYPFspdfTRLSMFSIdnntkVEVKMMSRMgryDIYLDnevpCTVLKLPYTddALMLLIMPKLgqved 281  African clawed...
XP_018414893 207 VLINLVLFKGEWQEPFhpgsTKLEKFIVdktttVDVPMMLRLgqyNFYRDtklsCTVVELPYKdsASMIIAIPEPgkihe 286  Nanorana parkeri
Q00387       228 VLVNYVLYKGEWANNFnptlTQKSLFSVdkntnVTVQMMNRLglyRTYQDd--dCKIIELPYKndTAMLLVVPQLgkiqe 305  African clawed...
XP_018414894 211 VLLDYSVFQAKWQKEFnpqgTEEDNFRVdgqapVTVPMMHQQgtyKTYKDkemrCNVVEVPYTsnITLLLIVPKPgdlqk 290  Nanorana parkeri
P20848       209 ALVDYISFHGKWKDKFkaerIMVEGFHVddktiIRVPMINHLgrfDIHRDrelsSWVLAQHYVgnATAFFILPDPkkmwq 288  human
XP_014348700 757 LLLNYIFFRGEWEKPFspnaTEEGDFFVnnditVKVPMMTRTsffEAQYEknisATILKLPYKgnATMMLILPDEgkmek 836  coelacanth
Feature 1                                                                                        
3H5C_A       290 aledylttdlVETWLrnmktrnmEVFFPKFKLDQKYEMHELLRQmgirrifspfadlselsatgrnlqVSRVLQRTVIEV 369  human
5HGC_A       248 le-qtldketIQKWSdhlfqrfmNLYFPKFSISGSYEISNTLRKmgivdvftnqad-lsgitgspdlkVSKVVHKASLDV 325  zebra finch
1QLP_A       263 le-nelthdiITKFLenedrrsaSLHLPKLSITGTYDLKSVLGQlgitkvfsngad-lsgvteeaplkLSKAVHKAVLTI 340  human
4IF8_A       283 le-kglqvdtFSRWKtllsrrvvDVSVPRLHMTGTFDLKKTLSYigvskifeehgd-ltkiaphrslkVGEAVHKAELKM 360  human
OCT68274     282 ve-aalskdtILRWRnstskkflRLYMPKFSISSSLKLKEIFSDmgmnnmfsdqad-fsgivedgklkLSKVIHKAVLDV 359  African clawed...
XP_018414893 287 le-qrlstetIHRWRtsfrkgpiELSLPKFSISSTINLEDALHQlgintaftnsad-fsgitqdvglkLDKAMHRTILDV 364  Nanorana parkeri
Q00387       306 l---vltsklINHWYeslatsivDLYMPTFSISGKVVLKDTLRKmgisdiftdkad-ltgiseqiklkVSMASHNAVLNV 381  African clawed...
XP_018414894 291 ve-rklsterIKKYFcsmrtstvDLYIPKVSFNIPLKIRNAILTmgigsmfsgdnadfsrmsnksrlrVSDIFHQSYTSI 369  Nanorana parkeri
P20848       289 le-ekltyshLENIQrafdirsiNLHFPKLSISGTYKLKRVPRNlgitkifsnead-lsgvsqeaplkLSKAVHVAVLTI 366  human
XP_014348700 837 ve-ktlshkvLMKWVfnkehnfiTLNLPKFSISASHELKEILMEmgitdvfgdnsd-psgitespnlkVSKAVHKAILEV 914  coelacanth
Feature 1           ###########              #                      
3H5C_A       370 DerGTEAVAGILSEitaysmppvikvdrPFHFMIYEEtsgmLLFLGRVVNP 420  human
5HGC_A       326 DekGTEAAAATAVEimpisfpptiefshPFLMLIFDRdtnsTLFIGKIVNP 376  zebra finch
1QLP_A       341 DekGTEAAGAMFLEaipmsippevkfnkPFVFLMIEQntksPLFMGKVVNP 391  human
4IF8_A       361 DerGTEGAAGTGAQtlpmetplvvkidkPYLLLIYSEkipsVLFLGKIVNP 411  human
OCT68274     360 DekGTEAAAVTAVNvirysllksqkvdrPFLVVICSKetdtILFIGRIVNP 410  African clawed frog
XP_018414893 365 DekGTVAAGATTSEmvpmmlfqrlifnrPFVLITSDKntnsILFMGTVMNP 415  Nanorana parkeri
Q00387       382 NefGTEAVGATSAQasptklfppflidsPFLVMIYSRtlgsQLFMGKVMDP 432  African clawed frog
XP_018414894 370 TegGTEGSGVTASNttslysnpelkvdrPFLMLVYHKitatILWMGRVKDP 420  Nanorana parkeri
P20848       367 DekGTEATGAPHLEekawskyqtvmfnrPFLVIIKEYitnfPLFIGKVVNP 417  human
XP_014348700 915 GekGTEAGGTTHVGiiplslpgevhfnrPFLMFIWHRltrsILFMGKIVNP 965  coelacanth

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