Conserved Protein Domain Family
lipocalin_CHL

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cd19851: lipocalin_CHL 
chloroplastic lipocalin(CHL) similar to Arabidopsis CHL
Chloroplastic lipocalin (CHL) prevents thylakoidal membrane lipids peroxidation and is protective against oxidative stress, especially mediated by singlet oxygen in response to excess light and other stress (e.g. heat shocks). CHL is required for seed longevity. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.
Statistics
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PSSM-Id: 381251
Aligned: 3 rows
Threshold Bit Score: 261.587
Created: 25-Oct-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
ligand binding
Feature 1:ligand binding cavity [chemical binding site]
Evidence:
  • Comment:hydrophobic cavity binds different hydrophobic ligands; ligands are bound within the beta-barrel in a central internal water-filled cavity lined with polar and hydrophobic amino acids
  • Comment:based on lipocalin/cytosolic fatty-acid binding protein family members with structure

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  #   #                      # #        # # #             # # #      
ABK26252  123 MRGMTAKNFNPiRYSGVWYEVASLKGGFSGQGQEDCHCTQGVYTFDaenrtIQVDTFCVHgnpdgyrTGIRGKVQClnnt 202 Sitka spruce
NP_190370 126 MRGMTAKNFDPvRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDmkesaIRVDTFCVHgspdgyiTGIRGKVQCvgae 205 thale cress
Q9STS7    126 MRGMTAKNFDPvRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDmkesaIRVDTFCVHgspdgyiTGIRGKVQCvgae 205 thale cress
Feature 1                       # #          # # #        # # #     # # #  
ABK26252  203 dlekeqtevERQEMIREKCYLRFPslPFIPKQPYNVIATDYDNYALVSGAKDKSFVQIYSR 263 Sitka spruce
NP_190370 206 dleksetdlEKQEMIKEKCFLRFPtiPFIPKLPYDVIATDYDNYALVSGAKDKGFVQVYSR 266 thale cress
Q9STS7    206 dleksetdlEKQEMIKEKCFLRFPtiPFIPKLPYDVIATDYDNYALVSGAKDKGFVQVYSR 266 thale cress

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