3U5N,3IU5


Conserved Protein Domain Family
Bromodomain

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pfam00439: Bromodomain (this model, PSSM-Id:395352 is obsolete and has been replaced by 425683)
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Bromodomain
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Statistics
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PSSM-Id: 395352
Aligned: 44 rows
Threshold Bit Score: 48.0826
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3U5N_A         86 CERLL----L---YLYCHE--LSIEFQEP------VPASIPNYYK-------IIKKPMDLSTVKKKLqkkHSQHYQ---I 140  human
XP_001307998    6 YQKVF----EataEFLKDP--FHEIFHTMvf---lNDASLPEYSK-------YVSKPIALEVIKANL---ESKKYS---T 63   Trichomonas v...
EAY09117        9 LLQEM----D---TMMKDE--MYVPFNDF------LGYVSEEYHQ-------KIARPIDLNTVKANL---ENRQYH---R 60   Trichomonas v...
EDO18860       24 LEEEF----Pa--DFFEDD--PAKIYESYlgflqnNTVVDGNFIS---------NNQLKLTTINAKY---ENKEYNvdnG 83   Vanderwaltozy...
Q6CY60        209 LEAAS----N---NNLDDTlnICQPFLELv-----DKDEYPEYEE-------VIRLPNSLNLVKNNL---ELGYYH---K 263  Kluyveromyces...
Q86U86        786 FVSVM----S---HQDDEG--RCYSDSLAe-----IPAVDPNFPN---------KPPLTFDIIRKNV---ENNRYR---R 836  human
XP_011391866  278 YSAVLdcirN---HIDATGrrPAEHLEQCp-----DPEVDPDFYE-------KVEKPTSLSAISQRI---QEGEYP---K 336  Ustilago mayd...
XP_001704393   25 IRTVL----R---DSMKPL--DSFTLF--------QNPVVVDYPDlkqqyeaVIEFPCSLSEIKQRLsnrSGNTYT---H 84   Giardia lambl...
XP_001609880 1495 AVEAI----G---ALMELP--QARWFIHN------PELSLVGYRS-------MVKHPMWFSKIEEKA---RGGQYT---M 1546 Babesia bovis...
XP_001308830   13 CAEKT----Q---LMIQNN--FSQWFRDPph---nSIRNYDQYLA-------VVKYPISLSEIADRI---RLNIYQ---Y 67   Trichomonas v...
3U5N_A        141 PDDFVADVRLIFKNCERFNE-MMKVVQV-YADT 171  human
XP_001307998   64 PAEWYNDINRMYQNAIEYHY-KSPVGTK-EIGI 94   Trichomonas vaginalis G3
EAY09117       61 YIDWYHDMELVFKNTIEFYKnEQFSPYPpMATY 93   Trichomonas vaginalis G3
EDO18860       84 FYKLYHDIKLVCTMLVHYYP-QGTRNYQ-IIDK 114  Vanderwaltozyma polyspora DSM 70294
Q6CY60        264 IYDFITDVNLTFQNALVFND-EDTTIYS-DALK 294  Kluyveromyces lactis
Q86U86        837 LDLFQEHMFEVLERARRMNR-TDSEIYE-DAVE 867  human
XP_011391866  337 ATDFEMDMLQLFENARRLHP-IGTQMYG-DAVV 367  Ustilago maydis 521
XP_001704393   85 IGDVFCDLCLTISNAMTFNK-SNTVILE-QVRI 115  Giardia lamblia ATCC 50803
XP_001609880 1547 PMQFKADIALVFKNARIVNK-ADSLPYA-DSIF 1577 Babesia bovis T2Bo
XP_001308830   68 VFEWDNDMQAVFKNAMAFNS-KNSQPYF-IAQY 98   Trichomonas vaginalis G3
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