Conserved Protein Domain Family
Vmethyltransf

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pfam01660: Vmethyltransf 
Viral methyltransferase
This RNA methyltransferase domain is found in a wide range of ssRNA viruses, including Hordei-, Tobra-, Tobamo-, Bromo-, Clostero- and Caliciviruses. This methyltransferase is involved in mRNA capping. Capping of mRNA enhances its stability. This usually occurs in the nucleus. Therefore, many viruses that replicate in the cytoplasm encode their own. This is a specific guanine-7-methyltransferase domain involved in viral mRNA cap0 synthesis. Specificity for guanine 7 position is shown by NMR in and in vivo role in cap synthesis. Based on secondary structure prediction, the basic fold is believed to be similar to the common AdoMet-dependent methyltransferase fold. A curious feature of this methyltransferase domain is that it together with flanking sequences seems to have guanylyltransferase activity coupled to the methyltransferase activity. The domain is found throughout the so-called Alphavirus superfamily, (including alphaviruses and several other groups). It forms the defining, unique feature of this superfamily.
Statistics
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PSSM-Id: 396298
Aligned: 122 rows
Threshold Bit Score: 121.635
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P89202     47 LNQCLGPEQCRTVRGGypefQIEFTGASN--TSHAMAAGLRGLELEYLYTLVPyGAVSYDIGGNFPAHMMKGrs-yV--- 120  Sunn-hemp mosaic ...
O40959    681 IFVHLSTRQKKIVCDLfphlKFEFKETTQ--SSHPVFNVVRTVSNFVLYKMQE-GRHFVDFGGNIGTVINSEcd------ 751  Little cherry vir...
Q67724     30 LDFAPPLKALETLHRLy--yPLRFKGGTLppTQHPILAGHQRVAEEVLHNFARgRSTVLEIGPSLHSALKLHgapnApva 107  Helicoverpa armig...
P87515     12 PESHFAKQVQSCFP------QFEIEAVQTtpNDHAHARAFSHLATKLIEMETAkDQIILDIGSAPARRLYSEhk------ 79   Barmah Forest virus
Q9WJF1     12 PQSPFVVQLQKSFP------QFEVVAQQVtpNDHANARAFSHLASKLIELEVPtTATILDIGSAPARRMFSEhq------ 79   Sindbis-like viru...
Q9WJD4     10 EDSPFLRALQRSFP------QFEVEAKQVtdNDHANARAFSHLASKLIETEVEpSDTILDIGSAPARRMYSKnk------ 77   Venezuelan equine...
ACN87268   10 ADSPYVKSLQRSFP------QFEIEARQVtdNDHANARAFSHVATKLIESEVDrDQVILDIGSAPVRHAHSNhr------ 77  
ABP73665   12 AESPFVKSLQKAFP------QFEIEAEQVtpNDHANARAFSHLASKLIEGEVEvGTTILDIGSAPARRMMSKha------ 79  
Q8VA07     10 ADSAFLKALQRAYP------MFEVEPRQVtpNDHANARAFSHLAIKLIEQEIDpDSTILDIGSAPARRMMSDrk------ 77   Chikungunya virus
Q8QZ73     10 AESPFLKSLQRAFP------AFEVEAQQVtpNDHANARAFSHLATKLIEQETEkDTLILDIGSAPARRMMSEht------ 77   Mayaro virus (str...
P89202    121 --HCCNPALDARDLARNENyRISIENYLsrfeDksGDycqwqrKkpkvskplpryqkacfdrynedpehvtcsetfEKCR 198  Sunn-hemp mosaic ...
O40959    752 dvHICNPVADSRDAKRHVDnGLFLAKSVgvsnNisvc-----------------------------------nklaQHCN 796  Little cherry vir...
Q67724    108 dyH-GCTKYGTRDGSRHITaLESRSVATgrpeFkaDAsllangIasrtf----------------------cvdgvGSCA 164  Helicoverpa armig...
P87515     80 -yHCVCPMKCTEDPERMLGyARKLIAGSakgkAekLRdlrdvlAtpdietq------------------slclhtdASCR 140  Barmah Forest virus
Q9WJF1     80 -yHCVCPMRSPEDPDRMMKyASKLAEKAckitNknLHekikdlRtvldtpdae--------------tpslcfhndVTCN 144  Sindbis-like viru...
Q9WJD4     78 -yHCICPMKCAEDPDRLYKyAAKLKKNCkditDkgLDqkladlAavmqepsle--------------resiclhddESCR 142  Venezuelan equine...
ACN87268   78 -yHCICPMISAEDPDRLQRyAERLKKSdi--tDknIAskaadlLevmstpdae--------------tpslcmhtdATCR 140 
ABP73665   80 -yHCVCPLRSAEDPERLAGyAKKLMSAAgnvtDlnISgkitdlKnviaipdle--------------tptfclhtdQTCR 144 
Q8VA07     78 -yHCVCPMRSAEDPERLANyARKLASAAgkvlDrnISgkigdlQavmavpdte--------------tptfclhtdVSCR 142  Chikungunya virus
Q8QZ73     78 -yHCVCPMRSAEDPERLLYyARKLAKASgevvDrnIAakiddlQsvmatpdne--------------srtfclhtdQTCR 142  Mayaro virus (str...
P89202    199 ISPpaerddiYATSLHSLYDIPYQNLGPALaRKRIK-VLHAAFHFSEDLLL----------------------------G 249  Sunn-hemp mosaic ...
O40959    797 HKSd------RAVMVE-VYDMTLTEMCQAMlAHGTI-RLDFILLLPGDLLE----------------------------D 840  Little cherry vir...
Q67724    165 FKSr------VGIANHSLYDVTLEELANAFeNHGLH-MVRAFMHMPEELLYmdnvvnaelgyrfhvieepmavkdcafqG 237  Helicoverpa armig...
P87515    141 YRG-------DVAVYQDVY--AIDAPTTLYhQALKGvRTAYWIGFDTTPFM----------------------------Y 183  Barmah Forest virus
Q9WJF1    145 TRA-------EYSVMQDVY---INAPGTIYhQAMKGvRTLYWIGFDTTQFM----------------------------F 186  Sindbis-like viru...
Q9WJD4    143 YEG-------QIAVYQDVY--AVDGPTSLYhQANKGvRVAYWIGFDTTPFM----------------------------F 185  Venezuelan equine...
ACN87268  141 YFG-------SVAVYQDVY--AVHAPTSIYhQALKGvRTIYWIGFDTTPFM----------------------------Y 183 
ABP73665  145 YNA-------DVAIYQDVY--AVHAPTSLYhQALKGvRVVYWIGFDTTPFM----------------------------F 187 
Q8VA07    143 QRA-------DVAIYQDVY--AVHAPTSLYhQAIKGvRLAYWVGFDTTPFM----------------------------Y 185  Chikungunya virus
Q8QZ73    143 TQA-------EVAVYQDVY--AVHAPTSLYfQAMKGvRTAYWIGFDTTPFM----------------------------F 185  Mayaro virus (str...
P89202    250 AS-EGLLTQIGGTFQRNGdv-------------------------------lTFSFLDESSLI--YTHSFrNVFEYVTRT 295  Sunn-hemp mosaic ...
O40959    841 FNtITIFDGGCKITKDDDk---------------------------------VYYYYGDAAEA--YTHDLnNLRNIMTDN 885  Little cherry vir...
Q67724    238 GDlRLHFPELDFINESQErrierlaa-------------------rgsysrrAVIFSGDDDWGdaYLHDFhTWLAYLLVR 298  Helicoverpa armig...
P87515    184 DAlAGAYPLYSTNWADEQvlesrniglcsdkvseggkkgrsilrkkflkqsdrVMFSVGSTL---YTESRkLLQSWHLPS 260  Barmah Forest virus
Q9WJF1    187 SAmAGSYPAYNTNWADEKvlearniglcstklsegrtgklsimrkkefkpgsRVYFSVGSTL---YPEHRaSLQSWHLPS 263  Sindbis-like viru...
Q9WJD4    186 KNlAGAYPSYSTNWADETvltarniglcssdvmersrrglsilrkkylkpsnNIIFSVGSTI---YHEKRdLLRSWHLPS 262  Venezuelan equine...
ACN87268  184 KNmAGSYPTYNTNWADERvlearniglgnsdlqesrlgklsilrkkrlqptnKIIFSVGSTI---YTEDRsLLRSWHLPN 260 
ABP73665  188 DAmAGAYPSYSTNWADELvlqarniglcssrlsegrsrglsimrkkalrpsdRVMFSVGSTL---YTESRsLLKSWHLPS 264 
Q8VA07    186 NAmAGAYPSYSTNWADEQvlkakniglcstdltegrrgklsimrgkklepcdRVLFSVGSTL---YPESRkLLKSWHLPS 262  Chikungunya virus
Q8QZ73    186 DTmAGAYPTYATNWADEQvlkarniglcsaslteghlgklsimrkkkmtpsdqIMFSVGSTL---YIESRrLLKSWHLPS 262  Mayaro virus (str...
P89202    296 FFVACNRY--AYMKEFRSRRVDTVFCSFIRIDTYClyrsvfkdcdehvfaamddawefkkkrvmleasrpifndvaqfnv 373  Sunn-hemp mosaic ...
O40959    886 LVCVDGT---AFKKTLETSYGPFRHFSLTKLETFPsgkiefltmydk--------------------------------- 929  Little cherry vir...
Q67724    299 NYPTPFGF--SLHIEVQRRHGSSIELRITRAPPgdrmlavvprt------------------------------------ 340  Helicoverpa armig...
P87515    261 TFHLKGKSsfTCRCDTIVSCEGYVLKKITMCPGVTgkpigyav------------------------------------- 303  Barmah Forest virus
Q9WJF1    264 VFHLKGKQsyTCRCDTVVSCEGYVVKKITISPGVTgetvgyav------------------------------------- 306  Sindbis-like viru...
Q9WJD4    263 VFHLRGTHnyTCRCETIVSCDGYVVKRIAISPGLYgtpsgyaa------------------------------------- 305  Venezuelan equine...
ACN87268  261 VFHLKGKSnfTGRCGTIVSCEGYVIKKITISPGLYgkvenlas------------------------------------- 303 
ABP73665  265 TFHLKGKDsyTCRCDTIVSCEGYVVKKITMSPGLFgkpvpyav------------------------------------- 307 
Q8VA07    263 VFHLKGKLsfTCRCDTVVSCEGYVVKRITMSPGLYgkttgyav------------------------------------- 305  Chikungunya virus
Q8QZ73    263 VFHLKGRQsyTCRCDTIVSCEGYVVKKITMSPGVFgktsgyav------------------------------------- 305  Mayaro virus (str...
P89202    374 yfpnakdkvclpifavksvsGAPVTT----RHILVE-KDFYWTaLNHIlT-YPDGKAD-FRGVMSFLESIRSRVVINGtt 446  Sunn-hemp mosaic ...
O40959    930 ---------ceknkmlvkvpMRNINGmvtlHDLIVD-RSMLMNlIEYCaNcVENFNRKgFEHIMSQYRSRKNYVIYNGkv 999  Little cherry vir...
Q67724    341 ---------sqglcripnifYYADASgtehKTILTS-QHKVNMlLNFMqT-RPEKELVdMTVLMSFARARLRAIVVASev 409  Helicoverpa armig...
P87515    304 ------------thhkegfvVGKVTDtirgERVSFAvCTYVPTtLCDQmT-GILATEVtADDAQKLLVGLNQRIVVNGrt 370  Barmah Forest virus
Q9WJF1    307 ------------tynsegflLCKVTDtvkgERVSFPvCTYIPAtICDQmT-GIMATDIsPDDAQKLLVGLNQRIVINGkt 373  Sindbis-like viru...
Q9WJD4    306 ------------tmhregflCCKVTDtlngERVSFPvCTYVPAtLCDQmT-GILATDVsADDAQKLLVGLNQRIVVNGrt 372  Venezuelan equine...
ACN87268  304 ------------tmhregflSCKVTDtlrgERVSFAvCTYVPAtLCDQmT-GILATDVsVDDAQKLLVGLNQRIVVNGrt 370 
ABP73665  308 ------------thhadgflVCKTTDtvkgERVSFPvCTYVPAtICDQmT-GILATDVtPDDAQKLLVGLNQRIVVNGrt 374 
Q8VA07    306 ------------thhadgflMCKTTDtvdgERVSFSvCTYVPAtICDQmT-GILATEVtPEDAQKLLVGLNQRIVVNGrt 372  Chikungunya virus
Q8QZ73    306 ------------thhaegflVCKTTDtiagERVSFPiCTYVPStICDQmT-GILATEVtPEDAQKLLVGLNQRIVVNGrt 372  Mayaro virus (str...
P89202    447 tasqwevdks------------------------------qlkdialslllIAKLEKLKIS 477  Sunn-hemp mosaic virus
O40959   1000 ihdqvdipld------------------------------llpgfigvclsEGIRLAEKVH 1030 Little cherry virus 1
Q67724    410 tesswnispa------------------------------dlvrtvvslyvLHIIERRRAA 440  Helicoverpa armigera stunt virus
P87515    371 qrntntmkny------------------------------llplvaqalakWAKEAKQDME 401  Barmah Forest virus
Q9WJF1    374 nrntntmqnyllpiiaqgfskwakerkadldnekmlgtrerkltygclwafRTKKVHSFYR 434  Sindbis-like virus YN87448
Q9WJD4    373 qrntntmknyllpvvaqafarwareykedqdderplglrdrqlvmgccwafKKHKITSVYK 433  Venezuelan equine encephalitis virus
ACN87268  371 qrntntmqnyllpvvaqafsrwarehradlddekelgvrertltmgccwafKTQKITSIYK 431 
ABP73665  375 qrnvntmknyllpvvaqafskwakeykadledekplgvrernltmcclwafRTRKIHTLYK 435 
Q8VA07    373 qrntntmknymipvvaqafskwakecrkdmedekllgvrertltccclwafKKQKTHTVYK 433  Chikungunya virus
Q8QZ73    373 qrntntmkny------------------------------llpvvsqafskWAKEYRLDQE 403  Mayaro virus (strain Brazil)
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