6HWX


Conserved Protein Domain Family
Gag_p30
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pfam02093: Gag_p30 (this model, PSSM-Id:396597 is obsolete and has been replaced by 426597)
Gag P30 core shell protein
According to Swiss-Prot annotation this protein is the viral core shell protein. P30 is essential for viral assembly.
Links
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Statistics
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PSSM-Id: 396597
Aligned: 3 rows
Threshold Bit Score: 434.099
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
6HWX_A    11 QYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLP 90 
Q27ID9   224 QYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPTQLP 303 Xenotropic MuLV-rel...
AGZ83094  11 QYWPFSASDLYNWKLHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQTLLTAEERQRVLLEARKQVPGEDGRPTQLP 90  Feline leukemia virus

6HWX_A    91 NEVDAAFPLERPDWDYTTQRGRNHLVLYRQLLLAGMQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPE 170
Q27ID9   304 NEVNAAFPLERPDWDYTTTEGRNHLVLYRQLLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPE 383 Xenotropic MuLV-rel...
AGZ83094  91 NVVDEAFPLTRPNWDFATPAGREHLRLYRQLLLAGLRGAARRPTNLAQVKQVVQGKEETPASFLERLKEAYRMYTPYDPE 170 Feline leukemia virus

6HWX_A   171 DPGQETNVSMSFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 218
Q27ID9   384 DPGQETNVSMSFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 Xenotropic MuLV-related virus VP62
AGZ83094 171 DPGQAASVILSFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNK 218 Feline leukemia virus
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