Conserved Protein Domain Family
APOBEC4

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pfam18775: APOBEC4 (this model, PSSM-Id:408546 is obsolete and has been replaced by 436728)
APOBEC4
A member of the AID/APOBEC family of cytosine deaminases. The biological function of APOBEC4 is poorly understood. However, it is widely conserved across vertebrates.
Statistics
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PSSM-Id: 408546
Aligned: 11 rows
Threshold Bit Score: 95.8691
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
KFO75589      22 IILYS-------SYSPCNEvphcCVSKIYNFS---LKYP-EITLCIYFSQLYHTQagc-psAAWNREALRSLWSLWprVT 89  common cuckoo
XP_012425312 136 MTWYL-------SWSPCGE----CCDIIQDFL---EEQP-NVNINIRVARLYYTD------RASNRKGLRELASSPg-VT 193 zebra finch
XP_018673149  83 VTVELm-----sSRSPSNA----GAEQLQGFLeycKKHSiKVNINFSFVQPFSWD------NKFNREGLHNLYEKG--VK 145 vase tunicate
PFX29682      91 LTGFLhdfqllsNFSPCGE----CSEKICEWL---AQNE-SVSVSIRFAHLHNIHvrvqkvAEDNAIGLRKLVEKG--VQ 160 Stylophora pist...
1_pfamImport   1 VTLYS-------NYTPCEEppgrCASALTHFL---QAHP-ALRLDLLFSQLYHTEdwh-pyGSANRQALRALGALWprLT 68 
XP_014071224  94 EVLYS-------NYMPCQE----CSQTLISFL---LRYP-WVRLDLLFSQLYHTApsq-thSLDNQTGLRSLAV----LT 153 Atlantic salmon
KFV87627       1 ITLYL-------SWSPCRN----CCYEMQYFL---KKHP-NVNICIYLARLYYTE------DEEICKALKDLSEKK--VI 57  Struthio camelu...
KFR13340       1 ITWYL-------SWSPCAN----CCRKILNFL---KKHS-YVNIDIRVARLYYIQ------VERNLQGLKKLESLAn-VT 58  Opisthocomus ho...
XP_006032683  79 VTWYL-------SWSPCAD----CASKIVKFL---KKYP-YLKLTIYVAQLYYHT------EEENRKGLRLLRSKK--VI 135 Chinese alligator
XP_025038797 110 VTWFL-------SWSPCWK----CSQSVVEFR---KAYP-KVNLEIYVARLFRHE------EECNRQGLRDLV-MNg-VT 166 Chinese soft-sh...
XP_006119994  94 LTWYM-------TWSPCGE----CCKAIRDFL---KEQP-NVNLVIYVARIYCHE------EENNRQGLRSLVNIG--VT 150 Chinese soft-sh...
KFO75589      90 LQRPPGELWPSLLCPFV 106 common cuckoo
XP_012425312 194 LEIMDAEDYNYCWETFI 210 zebra finch
XP_018673149 146 LKILSFQQVINCMMGDL 162 vase tunicate
PFX29682     161 LKALSDYDWLQLLM-ID 176 Stylophora pistillata
1_pfamImport  69 LSPISGGWWLSLLRKFV 85 
XP_014071224 154 LSPNSGAAWGHLLRCFV 170 Atlantic salmon
KFV87627      58 ISVMKIEDYIYCWKTFV 74  Struthio camelus australis
KFR13340      59 IGVMKIKDYTDCWKIFI 75  Opisthocomus hoazin
XP_006032683 136 IRVMDIADYNYCWKVFV 152 Chinese alligator
XP_025038797 167 IRVMNLSAYNYCWRTFV 183 Chinese soft-shelled turtle
XP_006119994 151 IRIMDLPVYSYCWRTFV 167 Chinese soft-shelled turtle
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