Conserved Protein Domain Family
PKD_4

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pfam18911: PKD_4 
PKD domain
This entry is composed of PKD domains found in bacterial surface proteins.
Statistics
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PSSM-Id: 408681
Aligned: 119 rows
Threshold Bit Score: 40.3336
Threshold Setting Gi: 379652805
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
SLN24013       561 DGMRITV---NAPPEPSFI-IpdrPVSVSELAMLDGTASLDTdGQILSYIWDFGDGAMGEGpIVDYAWTRAGEYTVTLTV 636  Ruegeria lit...
Q2FPD9         255 ITKTGIIq--VITPVVSSFtA----EPTEGTTPLQVKFNEQTsGTIVSREWSFGDGLFSELeNPTHVYEKPGTYEVSLKV 328  Methanospiri...
Q2FPD9         535 SVISVLSp--PKAPVADf-----sISSTEGTAPFAIVCTDQSeGEINEWIWDFGDGKVIRGkNPTHTYILPGQYSITLTV 607  Methanospiri...
jgi:Mpal_1810 2477 SGYSVTAp--LPAPVAG-FsAn----VTNGTAPLSVQFTDLStGTPTSWSWDFGDGTTSTtqSPSHTYVAAGNYSVNLTA 2549 Methanosphae...
OSZ82554       347 ESKSITVn---PNPVINFTaSpt----dGCTVPFSTTFSNTSt-SATSYLWRFGDGNTSTSaNPSHTYTALGNYTVKLIA 418  Chitinophaga...
KGE89754      1701 DTLTISVg---VAPDAE-FeGi---VTLGTTL-LELTNNTL---GATNFAWDFGDGNTSTAsAPSHTYTADGTYQVTLIA 1769 Phaeodactyli...
WP_086104201   369 STNTITVn---PRPVAD-FsApitS---KCEPPLTVNFQDLTtGGATGWQWDFGDGGTSTLqNPSHTYTAYGNFDVTLIV 441  Chitinophaga...
WP_148208301   333 TTIPTTVt---PTPTMQPVtAnftANVTTGQSPLSVQFTDLStGTIRQYFWQFGDGGASFDkNPVHTYSAAGTYTVSLVA 409  Methanosphae...
WP_148208301   186 NYITVTAsesPSAPVAnf-----nANITNGTVPLSVGFTDLStGAPVTWSWNFGDGNTSTMqNPVHNYAAAGNYTVNLTA 260  Methanosphae...
jgi:Mpal_1810 1148 G-YSVTAi--PPAPVAG-FtAn----iTNGTAPLSVGFTDAStGSPMNWSWSFGDGNTSIEqNPSHTYASTGNYTVNLTA 1219 Methanosphae...
SLN24013       637 EDDS 640  Ruegeria litorea R37
Q2FPD9         329 TGTH 332  Methanospirillum hungatei JF-1
Q2FPD9         608 RGPG 611  Methanospirillum hungatei JF-1
jgi:Mpal_1810 2550 TNAG 2553 Methanosphaerula palustris E1-9c
OSZ82554       419 SNAA 422  Chitinophagaceae bacterium IBVUCB1
KGE89754      1770 SNAC 1773 Phaeodactylibacter xiamenensis
WP_086104201   442 TNGF 445  Chitinophagaceae bacterium IBVUCB2
WP_148208301   410 IGST 413  Methanosphaerula palustris
WP_148208301   261 TNAG 264  Methanosphaerula palustris
jgi:Mpal_1810 1220 TNAG 1223 Methanosphaerula palustris E1-9c
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