1DXX


Conserved Protein Domain Family
CH_DMD_rpt1

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cd21231: CH_DMD_rpt1 
first calponin homology (CH) domain found in dystrophin and similar proteins
Dystrophin, encoded by the DMD gene, is a large, submembrane cytoskeletal protein that is the main component of the dystrophin-glycoprotein complex (DGC) in skeletal muscles. It links the transmembrane DGC to the actin cytoskeleton through binding strongly to the cytoplasmic tail of beta-dystroglycan, the transmembrane subunit of a highly O-glycosylated cell-surface protein. It is involved in maintaining the structural integrity of cells, as well as in the formation of the blood-brain barrier (BBB). Mutations in dystrophin lead to Duchenne muscular dystrophy (DMD). Moreover, dystrophin deficiency is associated with abnormal cerebral diffusion and perfusion, as well as in acute Trypanosoma cruzi infection. The dystrophin subfamily has been characterized by a compact cluster of domains comprising four EF-hand-like motifs and a ZZ-domain, followed by a looser region with two coiled-coils. These domains are believed to be involved in protein-protein interactions. In addition, dystrophin contains two syntrophin binding sites (SBSs) and a long N-terminal extension that comprises two actin-binding calponin homology (CH) domains, approximately 24 spectrin repeats (SRs) and a WW domain. This model corresponds to the first CH domain.
Statistics
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PSSM-Id: 409080
Aligned: 7 rows
Threshold Bit Score: 198.223
Created: 7-Oct-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Structure:1DXX; Homo sapiens dystrophin actin-binding domain (ABD) forms an antiparallel dimer, contacts at 4A.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ###  ## ### ##  #                                                               
1DXX_A         11 YEREDVQKKTFTKWVNAQFSKFGKqhIENLFSDLQDGRRLLDLLEGLTGQKLpKEKGSTRVHALNNVNKALRVLQNNNVD 90   human
P11532         11 YEREDVQKKTFTKWVNAQFSKFGKqhIENLFSDLQDGRRLLDLLEGLTGQKLpKEKGSTRVHALNNVNKALRVLQNNNVD 90   human
P11533         15 YEREDVQKKTFTKWINAQFAKCGRrcIEDLFNDFRDGRKLLELLECLTGQKIaKEKGSTRVHALNNVNKALQILQRNNVD 94   chicken
OCT95218       11 YEREDVQRKTFTKWINAQFAKFGKhpIEDLFTDLQDGRRLLDLLEGLTGQKLvKEKGSTRVHALNNVNKALQVLQKNNID 90   African clawe...
XP_005995012   28 DEREDVQKKTFTKWVNSQLAKAGKsqIEDLFTDFRDGRRLLELLEDLVGQKLaKEKGSTRVHALNNVNRALQVLQKNNVD 107  coelacanth
NP_001313616   28 DEREDVQKKTFTKWINSQFAKTRRppIDDLFTDLCDGRRLLELLEVLVGHEIvKERGFTRVHSLNNVNRALQILQKNNVD 107  zebrafish
XP_007902287   11 YEREDVQKKTFTKWINSQFTKTRKpvIDDLFTDLCDGRRLLELLEGLVGYDIvKEKGSTRVHALNNVNRALQILQKNNVD 90   elephant shark
Feature 1                              #  #   ###
1DXX_A         91 LVNIGSTDIVDGNHKLTLGLIWNIILHWQVK 121  human
P11532         91 LVNIGSTDIVDGNHKLTLGLIWNIILHWQVK 121  human
P11533         95 LVNIGSSDIVDGNHKLTLGLIWNIILHWQVK 125  chicken
OCT95218       91 LVNIGSADIVDGNHKLTLGLIWSIILHWQVK 121  African clawed frog
XP_005995012  108 LVNIGGADIVDGNHKLTLGLIWSIILHWQVK 138  coelacanth
NP_001313616  108 LVNIGGADIVDGNHKLTLGLIWSIILHWQVK 138  zebrafish
XP_007902287   91 LVNIGGSDIVDGNHKLTLGLIWSIILHWQVK 121  elephant shark

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