Conserved Protein Domain Family
CH_SYNE1_rpt2

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cd21243: CH_SYNE1_rpt2 
second calponin homology (CH) domain found in synaptic nuclear envelope protein 1 (SYNE-1) and similar proteins
SYNE-1, also called nesprin-1, enaptin, KASH domain-containing protein 1 (KASH1), myocyte nuclear envelope protein 1 (MYNE-1), or nuclear envelope spectrin repeat protein 1, is a multi-isomeric modular protein which forms a linking network between organelles and the actin cytoskeleton to maintain subcellular spatial organization. SYNE-1 also acts as a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex, which is involved in the connection between the nuclear lamina and the cytoskeleton. SYNE-1 contains two copies of the CH domain. This model corresponds to the second CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
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PSSM-Id: 409092
Aligned: 17 rows
Threshold Bit Score: 189.452
Created: 8-Oct-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative actin
Feature 1:putative actin binding site [polypeptide binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens filamin-A binds F-actin.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #   #                                                                 # ## 
Q8NF91         175 KIQGNAKKALLKWVQYTAGKqt----------------gIEVKDFGKSWRSGVAFHSVIHAIRPELVDLetvkgrSNREN 238   human
XP_023933151   232 RFKMGAKKALLVWTKHTVAKkv----------------eVEIKDFGPSWRDGRAFSAMVHSIRPELIDMnllpnkSNKEN 295   Lingula ana...
VDL63508        66 RSKVTAKQALTTWVQNAFSEkl----------------nIDIKDFGPSWRDGVAFNAIVHSIDPRLVDMrdverrSNREN 129   Hymenolepis...
OWF53354       179 KFRKNAKKALLAWTGNAITKry----------------gIEITNFGKSWRDGLAFNAIIHTIRPDLVDFeqvrqqNARVN 242   Yesso scallop
GBM00103       206 RWKGGARKALLHWVKNSISQrf----------------gVTVNDFGSSWRDGWAFLAIIHRIRPGLVSMekyknaTNKER 269   Araneus ven...
ELT88684       153 KFKGGAKKMMLGWAQKAVTKrf----------------gIEVKDFGRSWRSGLAFNAMVHNVRPDLIDMnslaqnPNRVN 216   Capitella t...
XP_026689717   208 KWQGAAKKALLQWVKRKTQNkpp-------------eldVVVKDFGPSWRDGRAFHSMIHTINPDLVDVdeirraTNRQN 274   vase tunicate
XP_006824848   164 AAKTGAKKALLKWAQRAAAKrvdravggdddnmdtrttsTDIKDFGKSWRDGMAFNVMIHSIRPELIDLaslqpkTNEQR 243   Saccoglossu...
XP_002613221   247 KGVAGAKKALLKWAKKAAARrvs-------------tagVEVQDFGKSWRDGIAFNALIHSVKPELVDMadikqkSNLER 313   Florida lan...
XP_022095661   205 KGKLTAKKALLAWARKASKAags-------------gmdIEVKDFGPSWRDGCAFNVLIHNIRQDLVDLsmlpkrTNIEN 271   crown-of-th...
Feature 1           ## #        #########      # ## ##  ##  #   
Q8NF91         239 LEDAFTIAETELGIPRLLDPEDVDVDKPDEKSIMTYVAQFLKHYP 283   human
XP_023933151   296 LETAFNAAEEHLGIPRLLDPEDVDVSKPDEKSIMTYVAQFLSKYP 340   Lingula anatina
VDL63508       130 LQRAFTVAEEKLGIPKILDPEDVDVERPDEKSIMTYVAQFYKAFP 174   Hymenolepis diminuta
OWF53354       243 LEQAFSTAENSLGIPRLLDPEDVDVEKPDEKSIMTYVAQFLKAYP 287   Yesso scallop
GBM00103       270 LEAAFSIAERELGIARLLDPEDVDVPHPDEKSIMTYVAQFLHLYP 314   Araneus ventricosus
ELT88684       217 LENAFDCAEKHLGIPRLLDSEDVDVDKPDEKSIMTYVAQFLEKYP 261   Capitella teleta
XP_026689717   275 LESAFHTAQKHLGIPRLLDPEDVDVDRPDEKSIMTYVAQFVKQYG 319   vase tunicate
XP_006824848   244 LDNAFTVAERDLGIPQLLDPKDVDVDKPDEKSIMTYVSQFLKEYP 288   Saccoglossus kowalevskii
XP_002613221   314 LEHAFTTAEEKLGIPRILEPQDVDVSKPDEKSIMTYVAQFLQAYP 358   Florida lancelet
XP_022095661   272 LDVAFNVAEKELGIVRLLDAQDVDVDKPDEKSIMTYVSQFFKAFP 316   crown-of-thorns starfish

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