1BKR,1WYQ


Conserved Protein Domain Family
CH_SPTB_like_rpt2

?
cd21248: CH_SPTB_like_rpt2 
second calponin homology (CH) domain found in the beta-I spectrin-like subfamily
The beta-I spectrin-like family includes beta-I, -II, -III and -IV spectrins. Spectrin is an actin crosslinking and molecular scaffold protein that links the plasma membrane to the actin cytoskeleton, and functions in the determination of cell shape, arrangement of transmembrane proteins, and organization of organelles. It is composed of two antiparallel dimers of alpha- and beta- subunits. Beta-I spectrin, also called spectrin beta chain, erythrocytic (SPTB), may be involved in anaemia pathogenesis. Beta-II spectrin, also called spectrin beta chain, non-erythrocytic 1 (SPTBN1), or fodrin beta chain, is a component of fodrin, which is the general spectrin-like protein that seems to be involved in secretion. Fodrin interacts with calmodulin in a calcium-dependent manner and is thus a candidate for the calcium-dependent movement of the cytoskeleton at the membrane. Beta-III spectrin, also called spectrin beta chain, non-erythrocytic 2 (SPTBN2), or spinocerebellar ataxia 5 protein (SCA5), may play a crucial role as a longer actin-membrane cross-linker or fulfill the need for greater extensible flexibility than can be provided by the other smaller conventional spectrins. Beta-IV spectrin is also called spectrin, non-erythroid beta chain 3 (SPTBN3) or spectrin beta chain, non-erythrocytic 4 (SPTBN4). Its mutation associates with congenital myopathy, neuropathy, and central deafness. Members of this subfamily contain two copies of the CH domain. This model corresponds to the second CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
?
PSSM-Id: 409097
Aligned: 23 rows
Threshold Bit Score: 211.1
Created: 20-Feb-2020
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
putative actin
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:putative actin binding site [polypeptide binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens SPTBN2 binds F-actin.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1           #   #                                                 # ##  #      #    ######
1BKR_A          2 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLkksNAHYNLQNAFNLAEqhLGLTKLLD 81   human
1WYQ_A          6 SGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLkkcNAHYNLQNAFNLAEkeLGLTKLLD 85   human
Q9H254        180 RSAKDALLLWCQMKTAGYPEVNIQNFTTSWRDGLAFNALIHRHRPDLVDFSKLtksNANYNLQRAFRTAEqhLGLARLLD 259  human
P11277        173 RSAKDALLLWCQMKTAGYPHVNVTNFTSSWKDGLAFNALIHKHRPDLIDFDKLkdsNARHNLEHAFNVAErqLGIIPLLD 252  human
EFX67006      168 RSAKDALLLWCQMKTAGYQNVNIRNFTTSWRDGLAFNAIIHKHCPELVQYDKLsksNAMFNLNNAFNVAEqkLGLTKLLD 247  common water ...
OCT68012      173 RSAKDALLLWCQMKTSGYPEVNIKNFTTSWRDGLAFSALIHRHRPDTIDFNKLtksNATYNLQQAFNTAEqqLGLTKLLD 252  African clawe...
RLV63913      136 KSAKDALLAWCQMKTAGYPNVNVQNFTTSWRDGLAFCALIHRHRPELLDVGSLrgaNALHNLQSAFAVAEreLGVTRLLD 215  Gouldian finch
RDD43106      149 KSAKDALLMWCKLKTASYDNVKMTNFTSSWRDGLAFNAIIHKHRPDAIKYDSLsvnSPLQNLRNAFKVAEesFGIPQLLD 228  Trichoplax sp...
EDO42431      142 RSAKDALLLWCQSKTVGYVHVTITNFTTSWRDGLAFNAIIHRHRPDLIEFEKLtkaDAEQNLEQAFEVAEtqLGITPLLD 221  starlet sea a...
XP_026689488  187 RSAKDALLLWCQMKTAGYANVNVHNFNTSWRDGLAFNAIIHKHRPDLIDYDSLkksNAMHNLQNAFNVAEqqLGLTKLLD 266  vase tunicate
Feature 1         ###        ## ##  ##  #  
1BKR_A         82 PEDIsvdhPDEKSIITYVVTYYHYF 106  human
1WYQ_A         86 PEDVnvdqPDEKSIITYVATYYHYF 110  human
Q9H254        260 PEDVnmeaPDEKSIITYVVSFYHYF 284  human
P11277        253 PEDVftenPDEKSIITYVVAFYHYF 277  human
EFX67006      248 AEDIyvdqPDEKSIITYVVTYYHYF 272  common water flea
OCT68012      253 PEDVnmehPDEKSIITYVVSFYHYF 277  African clawed frog
RLV63913      216 PEDVaveqPDERSVLTYVAALYHHF 240  Gouldian finch
RDD43106      229 AEDVnveyPDEKSIMTYVASYYHTF 253  Trichoplax sp. H2
EDO42431      222 AEDVnvdfPDEKSILTYVAAYYHYF 246  starlet sea anemone
XP_026689488  267 PEDIvverPDEKSIITYVVTYYHYF 291  vase tunicate

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap