1DIP


Conserved Protein Domain Family
ZIP_TSC22D

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cd21936: ZIP_TSC22D 
Click on image for an interactive view with Cn3D
leucine zipper domain found in the TSC22 domain family of leucine zipper transcription factors
The TGF-beta-stimulated clone-22 domain (TSC22D) family includes TSC22D1-4 and similar proteins. They have diverse physiological functions, including cell growth, development, homeostasis, and immune regulation. All family members contain a conserved leucine zipper (ZIP) domain located at the C-terminus. Its first helix is not basic and does not contain the consensus sequence, NXX(A)(A)XX(C/S)R, found in most basic region/leucine zipper (bZIP) proteins. In the bZIP family of transcription factors, the leucine zipper acts as a dimerization domain and the upstream basic region as a DNA-binding domain. However, DNA-binding capability of TSC22D family proteins is not obvious, due to the lack of the basic region found in the original bZIP DNA-binding domains. Similar to bZIP, ZIP forms homo- and heterodimers, resulting in many dimers that may have different effects on transcription.
Statistics
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PSSM-Id: 409276
Aligned: 40 rows
Threshold Bit Score: 66.8207
Created: 20-May-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interface
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Comment:leucine zippers form homo- or heterodimers with other leucine zippers
  • Structure:1DIP; Sus scrofa TSC22D1 forms a homodimer, contacts at 4A
    View structure with Cn3D
  • Citation:PMID 8375381
  • Citation:PMID 9388238

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      ###  #  ##  ## ##  ## ##  ##  #   #
1DIP_A         1 XMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQ 49   pig
PIK55776      90 AMDIVKGHLLMAVREEVEELKTQISELLQDNEQLRKENALLKEGTSGSS 138  Japanese sea cucumber
XP_794705     62 AMDLVKSHLLFAVREEVEVLKEQIKILLEKNDLLQEENAALKQRLQAST 110  purple sea urchin
XP_002739864 324 AMDLVKSHLMYAVREEVEVLKEQIKELLERNSQLEKENTLLRQQQVQVV 372  Saccoglossus kowalevskii
XP_007909948  33 AMDLVKIHLMVAVREEVEVLKEQIKDLVEKNSQLEQENSLLKQLFSSES 81   elephant shark
XP_002593767  12 AMDLVKSHLMYAVREEVEVLKEQIKELIERNQQLERENNLLKQNASSDV 60   Florida lancelet
RVE60934     176 TVDLMKTHLMMMVQEEAELLRDQIAELSYRNQQLQRENIVLKAIIQNTN 224  javanese ricefish
XP_024502789 418 AMDLVKFHLSRSIRQEYDQLNAQIAELKNKVQVLECQNNILKSFAPEDI 466  Strongyloides ratti
ROT62408      35 AMELVKSHLVHAVREEMDCMRDTIVQLKMRVSQLEQENAALRSSVNNSQ 83   Pacific white shrimp
RNA19828     372 AMDMVKSHLTQAVRDEIVTLKNQIKNLREHCNRLEQENRLLKTKMPSDI 420  Brachionus plicatilis

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