2EDJ,2EO9


Conserved Protein Domain Family
IgI_5_Robo

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cd20952: IgI_5_Robo 
Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
The members here are composed of the fifth Ig-like domain of Roundabout (Robo) homolog 1/2 and similar domains. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (Robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. Robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. The fifth Ig-like domain of Robo 1 and 2 is a member of the I-set Ig domains, having A-B-E-D strands in one beta-sheet and A'-G-F-C-C' in the other. Like the V-set Ig domains, members of the I-set have a discontinuous A strand but lack a C" strand. I-set domains are found in several cell adhesion molecules (such as VCAM, ICAM, and MADCAM), and are also present in numerous other diverse protein families, including several tyrosine-protein kinase receptors
Statistics
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PSSM-Id: 409544
Aligned: 6 rows
Threshold Bit Score: 137.243
Created: 17-Sep-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:Ig strand A [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ####                                                                            
2EDJ_A         10 IILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTfpgrdpRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETS 89   human
2EO9_A         10 VIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLvstqdsRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEAT 89   human
NP_571708     425 IIRQGPANQTLGVDSVALLRCHASGEPVPTISWLKDGVSllgkdpRMSLQDLGSLQIKGLRLSDSGIYTCVAASSSGETS 504  zebrafish
CAG07561      360 ILTSDSQEYPVVQGVDVIMNCSAFSSPLPTISWFRGANQeavkgeRFFTLQNGSLQIIGAEKNDSGKYVCVALNTEGKAA 439  Tetraodon nig...
CAI11663     4336 LTLQSKLETVVDAGSTVVLNCQAEGEPVPVIEWSRQGRPllg-neHITALNNGSLRLRSAQKEDTAEYECVARNLLGSVL 4414 zebrafish
XP_001364620   31 IFVVEPQDVVVRAGGTVVLLCQAAGEPVPTVEWTHDGHPirv-nqRLRTLPNGSLQFKGVEMDDMGEYECVAHNLLGTAT 109  gray short-ta...
Feature 1                
2EDJ_A         90 WSAVLDV 96   human
2EO9_A         90 WSAYIEV 96   human
NP_571708     505 WSAFLEV 511  zebrafish
CAG07561      440 VTAVLDV 446  Tetraodon nigroviridis
CAI11663     4415 VRVTLTV 4421 zebrafish
XP_001364620  110 AHAFVAV 116  gray short-tailed opossum

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