4P5M


Conserved Protein Domain Family
IgC1_MHC_II_beta_HLA-DP

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cd21003: IgC1_MHC_II_beta_HLA-DP 
Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain of histocompatibility antigen (HLA) DP; member of the C1-set of Ig superfamily (IgSF) domains
The members here are composed of the Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain of histocompatibility antigen (HLA) DP. HLA class II histocompatibility antigen, DP(W2) beta chain is a protein that in humans is encoded by the HLA-DPB1 gene. It plays a central role in the immune system by presenting peptides derived from extracellular proteins. MHC class II molecules are encoded by three different loci, HLA-DR, -DQ, and -DP, which are about 70% similar to each other. HLA-DP is an alphabeta heterodimer cell-surface receptor. Each DP subunit (alpha-subunit, beta-subunit) is composed of a alpha-helical N-terminal domain, an IgG-like beta sheet, a membrane spanning domain, and a cytoplasmic domain. The alpha-helical domain forms the sides of the peptide binding groove. The beta sheet regions form the base of the binding groove and the bulk of the molecule as well as the inter-subunit (non-covalent) binding region. Individuals carrying the MHCII allele, HLA-DP2, are at risk for chronic beryllium disease (CBD), a debilitating inflammatory lung condition caused by the reaction of CD4 T cells to inhaled beryllium. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. These molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), including B-lymphocytes, monocytes, and macrophages in both humans and mice. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from proteolytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome before they are transported to the cell surface. MHC class II molecules are heterodimers, comprised of two similarly-sized membrane-spanning chains, alpha and beta. Each chain had two globular domains (N- and C-terminal), and a membrane-anchoring transmembrane segment. The two chains form a compact four-domain structure. The peptide-binding site is a cleft in the structure.
Statistics
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PSSM-Id: 409594
Aligned: 23 rows
Threshold Bit Score: 196.516
Created: 29-May-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:Ig strand A [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #########                                                                     
4P5M_B       115 RVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYTC 194 human
XP_016075582  57 RVQPKVNVPASKKGPLQHPNLLVCHVTDFYPGNIQVRWFQNGQEETVQLVSTNLIHNGDWTFQILVMLKMSPQQGDVYTC 136 Miniopterus nat...
XP_019516382 128 RVQPKVNVSPSKKGLLQHHNLLVCHVTDFYPGDIQVCWFLNGQEETAGVVSTTPIHNGDWTFQILVMLEMTPQQGDVYIC 207 great roundleaf...
XP_022366655 120 RVQPQVHVSPSKKGHPQHHNLLVCHVSDFYPGHIQVRWFLNGQEETAGVLSTNLMHNRDWTFQILVMLEITPQQGDVYTC 199 Enhydra lutris ...
XP_006738142  22 PVQPQVHVSPSKKGHLQHHNLLVCHVSDFYPGHIQVRWFLNGQEETAGVLSTNSMHNGDWTFQTLVMLEMTPRQGDVYAC 101 Weddell seal
XP_028365964 141 RVQPKVNVSPSKKAPLQYPNLLVCHVTDFYPGIIQVRWFLNGQEETAGVVTTNPIHNGDWTFQILVMLEMTPQRGDVYTC 220 pale spear-nose...
XP_008691734 150 RVQPKVNVFPSEKGHPQHHNLLVCHVSDFYPGHIQVHXFLNGQEETAGVLSANSMHNGDWTFQILVMLEMTPQQGDVYVC 229 polar bear
XP_026338241  20 RVQPKVNVSPSEKGHPQHHNLLVCHVSDFYPGHIQVHXFLNGQEETAGVLSANSMHNGDWTFQILVMLEMTPQQGDVYVC 99  Ursus arctos ho...
XP_021540305 106 RVQPQVHVSPSKKGHPQHHNLLVCHVSDFYPGHIQVRWFLNGQEETAGVLSTNSMHNGDWTFQTLVMLEMTPRQGDVYAC 185 Hawaiian monk seal
XP_010947452 110 TVPPKVNVSPSKKEALQPHSLLICHVTDFYPGHIQVRWFLNGQEETAGVVATNPIHNGDWTFQLLVMLEMSPQQGDVYTC 189 Bactrian camel
Feature 1                        
4P5M_B       195 QVEHTSLDSPVTVEWK 210 human
XP_016075582 137 QVEHPSLDSPVTVDWK 152 Miniopterus natalensis
XP_019516382 208 QVEHPSLDSPVTVEWR 223 great roundleaf bat
XP_022366655 200 QVEHPSLDSPVTVEWR 215 Enhydra lutris kenyoni
XP_006738142 102 QVEHPSLDGPVTVEWK 117 Weddell seal
XP_028365964 221 LVEHASLDRPVTVEWR 236 pale spear-nosed bat
XP_008691734 230 QVEHPSLDSPVTVEWK 245 polar bear
XP_026338241 100 QVEHPSLDSPVTVEWK 115 Ursus arctos horribilis
XP_021540305 186 QVEHPSLDGPVTVEWK 201 Hawaiian monk seal
XP_010947452 190 HVEHPSLDRPVTVEWK 205 Bactrian camel

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