5VCL


Conserved Protein Domain Family
IgC1_MHC_Ib_Qa-1

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cd21013: IgC1_MHC_Ib_Qa-1 
Class Ib major histocompatibility complex (MHC) immunoglobulin domain of Qa-1 and similar proteins; member of the C1-set of Ig superfamily (IgSF) domains
Class Ib major histocompatibility complex (MHC) immunoglobulin domain of Qa-1 and similar proteins. Qa-1 presents hydrophobic peptides including Qdm derived from the leader sequence of classical MHC I molecules for immune surveillance by NK cells. Qa-1 bound peptides derived from the TCR Vbeta8.2 of activated T cells also activates CD8+ regulatory T cells to control autoimmunity and maintain self-tolerance. Four allotypes of Qa-1 (Qa-1a-d) are expressed that are highly conserved in sequence but have several variations that could affect peptide binding to Qa-1 or TCR recognition. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta-2-microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Statistics
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PSSM-Id: 409604
Aligned: 6 rows
Threshold Bit Score: 212.289
Created: 6-Aug-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                             # #                          ## ###     # #                
5VCL_A       182 RSDPPKAHVTHHPRSEDYVTLRCWALGFYPADITLTWQLNGEELTQDMEFVETRPAGDGNFQKWASVVVPLGKEQNYTCH 261 house mouse
AAA16900     201 RSDPPKAHVTHHPRSEDYVTLRCWALGFYPADITLTWQLNGEELTQDMEFVETRPAGDGNFQKWASVVVPLGKEQNYTCH 280 Mus musculus
XP_021010633 205 RKDPPNAHVTHHPRSEGEVTLRCWALGFYPADITLTWQLNGEELTQDMEFVETRPAGDGTFQKWASVVVPLGKEQKYTCH 284 Ryukyu mouse
XP_029326889 205 RKDPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMEFVETRPAGDGTFQKWAAVVVPLGKEQKYTCH 284 Ryukyu mouse
XP_029326890 205 RTDPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMEFVETRPAGDGTFQKWAAVVVPLGKEQKYTCH 284 Ryukyu mouse
XP_003945787 201 RSDPPKAHVTHHPRSEDYVTLRCWALGFYPADITLTWQLNGEELTQDMEFVETRPAGDGNFQKWASVVVPLGKEQNYTCH 280 house mouse
Feature 1                         
5VCL_A       262 VEHEGLPEPLTLRWEPP 278 house mouse
AAA16900     281 VEHEGLPEPLTLRWEPP 297 Mus musculus
XP_021010633 285 VEHEGLPEPLTLRWEPP 301 Ryukyu mouse
XP_029326889 285 VEHEGLPEPLTLRWEPP 301 Ryukyu mouse
XP_029326890 285 VEHEGLPEPLTLRWEPP 301 Ryukyu mouse
XP_003945787 281 VEHEGLPEPLTLRWEPP 297 house mouse

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