1K8D


Conserved Protein Domain Family
IgC1_MHC_Ib_Qa-2

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cd21014: IgC1_MHC_Ib_Qa-2 
Class Ib major histocompatibility complex (MHC) immunoglobulin domain of Qa-2; member of the C1-set of Ig superfamily (IgSF) domains
The members here are composed of the Class Ib major histocompatibility complex (MHC) immunoglobulin domain of QA-2. Qa-2 is a nonclassical MHC Ib antigen, which has been implicated in both innate and adaptive immune responses, as well as embryonic development. Qa-2 has an unusual peptide binding specificity in that it requires two dominant C-terminal anchor residues and is capable of associating with a substantially more diverse array of peptide sequences than other nonclassical MHC. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta-2-microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Statistics
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PSSM-Id: 409605
Aligned: 10 rows
Threshold Bit Score: 205.366
Created: 13-Mar-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                             # #                          ## ###     # #                
1K8D_A       181 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCH 260 house mouse
CAA28977     198 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCH 277 house mouse
P14429       202 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCH 281 house mouse
P14430       202 CTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCH 281 house mouse
NP_997531    202 CTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCH 281 house mouse
NP_034524    202 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCH 281 house mouse
NP_001185489 202 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCH 281 house mouse
NP_001188389 202 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCH 281 house mouse
NP_075613    202 CTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCH 281 house mouse
NP_001355671 202 CTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCH 281 house mouse
Feature 1                      
1K8D_A       261 VNHEGLPEPLTLRW 274 house mouse
CAA28977     278 VNHEGLPEPLTLRW 291 house mouse
P14429       282 VNHEGLPEPLTLRW 295 house mouse
P14430       282 VNHEGLPEPLTLRW 295 house mouse
NP_997531    282 VNHEGLPEPLTLRW 295 house mouse
NP_034524    282 VNHEGLPEPLTLRW 295 house mouse
NP_001185489 282 VNHEGLPEPLTLRW 295 house mouse
NP_001188389 282 VNHEGLPEPLTLRW 295 house mouse
NP_075613    282 VNHEGLPEPLTLRW 295 house mouse
NP_001355671 282 VNHEGLPEPLTLRW 295 house mouse

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