1N59,2VAB,1KJ2,1KJ3,1FZJ,1LEG,1LEK,1BQH,1FO0,1FZK,1FZM,1FZO,1G7P,1G7Q,1KBG,1OSZ,1VAC,1VAD,2VAA,2CKB,1MWA,1G6R


Conserved Protein Domain Family
IgC1_MHC_Ia_H-2Kb

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cd21019: IgC1_MHC_Ia_H-2Kb 
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Class Ia major histocompatibility complex (MHC) immunoglobulin domain of H-2Kb; member of the C1-set of Ig superfamily (IgSF) domains
The members here are composed of the Class Ia major histocompatibility complex (MHC) immunoglobulin domain of H-2Kb. H-2Kb is an alloantigen for the 2C T cell receptor (TCR). H-2Kb forms a complex with beta-2-microglobulin, and a peptide, including VSV-8 (RGYVYNGL), SEV-9 (FAPGNYPAL), and OVA-8 (SIINFEKL). Comparison of the OVA-8, VSV-8, and SEV-9 complexes with H-2Kb indicates that four side chains (Lys-66, Glu-152, Arg-155, and Trp-167) adopt peptide-specific conformations. H-2Kb paralogs include H-2Db, H-2Kbml and H-2KbI1s. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta-2-microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Statistics
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PSSM-Id: 409610
Aligned: 31 rows
Threshold Bit Score: 213.047
Created: 13-Mar-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 # #         # #  #                        # ##### # #                  
1N59_A       181 RTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCH 260 house mouse
2VAB_A       181 RTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCH 260 house mouse
1MWA_H       181 RTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCH 260 house mouse
1G6R_H       181 RTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCH 260 house mouse
NP_001001892 202 RTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCH 281 house mouse
XP_006523736 222 RTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCH 301 house mouse
XP_006523737 222 RTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCH 301 house mouse
XP_006523739 222 RTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCH 301 house mouse
XP_006523740 222 RTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCH 301 house mouse
XP_006523741 222 RTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCH 301 house mouse
Feature 1                      
1N59_A       261 VYHQGLPEPLTLRW 274 house mouse
2VAB_A       261 VYHQGLPEPLTLRW 274 house mouse
1MWA_H       261 VYHQGLPEPLTLRW 274 house mouse
1G6R_H       261 VYHQGLPEPLTLRW 274 house mouse
NP_001001892 282 VYHQGLPEPLTLRW 295 house mouse
XP_006523736 302 VYHQGLPEPLTLRW 315 house mouse
XP_006523737 302 VYHQGLPEPLTLRW 315 house mouse
XP_006523739 302 VYHQGLPEPLTLRW 315 house mouse
XP_006523740 302 VYHQGLPEPLTLRW 315 house mouse
XP_006523741 302 VYHQGLPEPLTLRW 315 house mouse

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