1AKJ,1AO7,1B0G,1B0R,1BD2,1DUY,1DUZ,1HHG,1HHH,1HHI,1HHJ,1HHK,1I1F,1I1Y,1I4F,1I7R,1I7T,1I7U,1IM3,1JF1,1JHT,1QR1,1QRN,1QSE,1QSF,2CLR


Conserved Protein Domain Family
IgC1_MHC_Ia_HLA-A

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cd21027: IgC1_MHC_Ia_HLA-A 
Click on image for an interactive view with Cn3D
Class Ia major histocompatibility complex (MHC) immunoglobulin domain of human leukocyte antigen (HLA) A; member of the C1-set of Ig superfamily (IgSF) domains
The members here are composed of the class Ia major histocompatibility complex (MHC) immunoglobulin domain of human leukocyte antigen (HLA) A. The classical class I molecules (HLA-A, -B, and -C) are responsible for the presentation of endogenous antigen to CD8+ T cells. The receptor is a heterodimer, and is composed of a heavy alpha chain and smaller beta chain. The alpha chain is encoded by a variant HLA-A gene, and the beta chain (beta-2-microglobulin) is an invariant beta-2-microglobulin molecule. The beta-2-microglobulin protein is coded for by a separate region of the human genome. HLA-A2 is associated with spontaneous abortions, HIV, and Hodgkin lymphoma. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta-2-microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Statistics
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PSSM-Id: 409618
Aligned: 37 rows
Threshold Bit Score: 195.054
Created: 13-Mar-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           # #                          ## ###     # #               
1AKJ_A    180 QRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTC 259 human
2CLR_A    180 QRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTC 259 human
P01891    204 QRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWVAVVVPSGQEQRYTC 283 human
P10314    204 QRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTC 283 human
P30457    204 QRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTC 283 human
P30450    204 QRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTC 283 human
P30453    204 QRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTC 283 human
P18462    204 QRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTC 283 human
P30456    204 QRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTC 283 human
P30512    204 QRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTC 283 human
Feature 1                    
1AKJ_A    260 HVQHEGLPKPLTLRW 274 human
2CLR_A    260 HVQHEGLPKPLTLRW 274 human
P01891    284 HVQHEGLPKPLTLRW 298 human
P10314    284 HVQHEGLPKPLTLRW 298 human
P30457    284 HVQHEGLPKPLTLRW 298 human
P30450    284 HVQHEGLPKPLTLRW 298 human
P30453    284 HVQHEGLPKPLTLRW 298 human
P18462    284 HVQHEGLPKPLTLRW 298 human
P30456    284 HVQHEGLPKPLTLRW 298 human
P30512    284 HVQHEGLPKPLTLRW 298 human

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