1X4F,1X4D


Conserved Protein Domain Family
RRM1_2_MATR3_like

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cd12436: RRM1_2_MATR3_like 
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RNA recognition motif 1 (RRM1) and 2 (RRM2) found in the matrin 3 family of nuclear proteins
This subfamily corresponds to the RRM of the matrin 3 family of nuclear proteins consisting of Matrin 3 (MATR3), nuclear protein 220 (NP220) and similar proteins. MATR3 is a highly conserved inner nuclear matrix protein that has been implicated in various biological processes. NP220 is a large nucleoplasmic DNA-binding protein that binds to cytidine-rich sequences, such as CCCCC (G/C), in double-stranded DNA (dsDNA). Both, Matrin 3 and NP220, contain two RNA recognition motif (RRM), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a Cys2-His2 zinc finger-like motif at the C-terminal region.
Statistics
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PSSM-Id: 409870
Aligned: 8 rows
Threshold Bit Score: 86.6284
Created: 13-Sep-2011
Updated: 17-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1X4F_A         26 RVIHLSNLPhsg-ysDSAVLKLAEPYGKIKNYILMrm---------kSQAFIEMEtREDAMAMVDHclkkalwfqGRCVK 95   house mouse
Q14966        676 SVLLITELPedg-ctEEDVRKLFQPFGKVNDVLIVpy---------rKEAYLEMEfKEAITAIMKYiettpltikGKSVK 745  human
1X4D_A         16 RVVHIMDFQrgk-nlRYQLLQLVEPFGVISNHLILnk---------iNEAFIEMAtTEDAQAAVDYytttpalvfGKPVR 85   house mouse
Q800H4        491 RVIRVRHLPvsdeytDADFLNIAKPYGTVIRHWMFrl---------hRTGLIEMEtASDAEKVLSAakmkkitvaGKHPK 561  zebrafish
Q800H4        326 RVLEVAGFPvakkysEADLLKIGEKYGDVAGCCLVrsn------rkvEKALIEMVnADDAAKLEADckkqhiklgGKILR 399  zebrafish
CAG06103      345 RLVYLTGIPkd--asEEEVTSLVGSFGKINNVILIpssgeqsdkdeaQKASVCMVkPEDAQNLASStel---firQQKLT 419  spotted green...
XP_018535085  842 RVVYIGQIPssk-ysDEAVLKLAEPYGKVRKYFLNri---------kRECFIEMEkAEDAEKMAEDckanppkfnGKRLT 911  barramundi perch
XP_002125219  420 RVLYLRYKSnr--imESDLRQLAEAFGKVTNLLTIraki----pngyHQAFMEMDhWDCAAAMLERymtksplikGCVVM 493  Ciona intesti...
1X4F_A         96 VDLSEK 101  house mouse
Q14966        746 ICVPGK 751  human
1X4D_A         86 VHLSQK 91   house mouse
Q800H4        562 IAVSTK 567  zebrafish
Q800H4        400 IKVSQK 405  zebrafish
CAG06103      420 ASVAKV 425  spotted green pufferfish
XP_018535085  912 VYVSRK 917  barramundi perch
XP_002125219  494 VQKSNY 499  Ciona intestinalis
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