Conserved Protein Domain Family
RRM2_RBM6

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cd12563: RRM2_RBM6 
RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)
This subgroup corresponds to the RRM2 of RBM6, also termed lung cancer antigen NY-LU-12, or protein G16, or RNA-binding protein DEF-3, which has been predicted to be a nuclear factor based on its nuclear localization signal. It shows high sequence similarity to RNA-binding protein 5 (RBM5 or LUCA15 or NY-REN-9). Both, RBM6 and RBM5, specifically bind poly(G) RNA. They contain two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), two C2H2-type zinc fingers, a nuclear localization signal, and a G-patch/D111 domain. In contrast to RBM5, RBM6 has two additional unique domains: the decamer repeat occurring more than 20 times, and the POZ (poxvirus and zinc finger) domain. The POZ domain may be involved in protein-protein interactions and inhibit binding of target sequences by zinc fingers.
Statistics
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PSSM-Id: 409979
Aligned: 4 rows
Threshold Bit Score: 139.598
Created: 22-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P78332        654 ESKTIMLKRIYRsTPPEVIVEVLEPYVRLTtANVRIIKNRTgPMGHTYGFIDLDSHAEALRVVKILq-nLDPPFSIDGKM 732  human
CBN80589      518 DSKTMIIKNVKPtTTVETILKALDPFAYLDeRNVRLVKAKP-PGAKCFCFVDMDSHEQVTRLVELLt--KPRPLYIDGVR 594  European seabass
NP_001025759  690 GSRTIMLKRITRfTPPEVIVGLLAPYVRIStSNVRIMKNKAgRMGQTYGFIELDSHAEALRLLKILq-nLDPPICIDGRT 768  chicken
XP_010345488  562 PREAIMLKRIYRsTPPEVIVEVLEPYVRLTtANVRIIKNRTgPMGHTYGFIDLDSHAVSFLYLGLIyhsFSCGTFFYGRI 641  Bolivian squi...
P78332        733 VAVNLATG 740  human
CBN80589      595 VYAEVAKP 602  European seabass
NP_001025759  769 LEVNLATG 776  chicken
XP_010345488  642 ENFSVGTV 649  Bolivian squirrel monkey
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