Conserved Protein Domain Family
RRM1_Nop12p_like

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cd12669: RRM1_Nop12p_like 
RNA recognition motif 1 (RRM1) found in yeast nucleolar protein 12 (Nop12p) and similar proteins
This subgroup corresponds to the RRM1 of Nop12p which is encoded by YOL041C from Saccharomyces cerevisiae. It is a novel nucleolar protein required for pre-25S rRNA processing and normal rates of cell growth at low temperatures. Nop12p shares high sequence similarity with nucleolar protein 13 (Nop13p). Both, Nop12p and Nop13p, are not essential for growth. However, unlike Nop13p that localizes primarily to the nucleolus but also present in the nucleoplasm to a lesser extent, Nop12p is localized to the nucleolus. Nop12p contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains).
Statistics
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PSSM-Id: 410070
Aligned: 6 rows
Threshold Bit Score: 161.488
Created: 19-Dec-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q08208   148 RTVFIGNILstvITSKKVYKEFKklfgtnpiaeteesgnekeeesskksdnneFAIESIRFRSISFdeALPRKVAFVQQK 227 Saccharomyces cerev...
Q6FUS6   112 RTIFVGNLSnevIISKSTYKLFQklfnnid----------------dddenkkLPIQSIRFRSVSFedALPRKVAFVQQK 175 Candida glabrata CB...
O13741   164 KTVFVNNLParvVTNKGDYKDLTkhf------------------------rqfGAVDSIRFRSLAFseAIPRKVAFFEKK 219 Schizosaccharomyces...
Q6BTS9   159 RTVFVGNVNasvVGSKPMYKKFKklf------------------------sqyGKIQSIRFRSISFddAVPRKVAFAKKK 214 Debaryomyces hansen...
Q6C2Q7   168 YTIFVGNVSsevITDKTVYNNFKalf------------------------aaiGTVASVRFRSISFskLLPRKVAFISQQ 223 Yarrowia lipolytica...
CCJ28747 115 CTIFVGNLPisvVSSKSVYKNFKtkf------------------------lefGKIKSIRFRSIAFstFLPKKIAYIQKK 170 Pneumocystis jirovecii
Q08208   228 FHksrdTINAYIVYKNks-aVRKICSNLNAVVFqDHHLRVDSVAHP 272 Saccharomyces cerevisiae S288c
Q6FUS6   176 LHksraSVNAYIVYKEqsplLNKLIKRLNGQVFsNRHLRVDSITHP 221 Candida glabrata CBS 138
O13741   220 FHserdTVNAYIVFRDs--sSARSALSLNGTMFmDRHLRVDSVSHP 263 Schizosaccharomyces pombe 972h-
Q6BTS9   215 LHssrdTLNAYVVFAEke-pSLKCVPKLNATEFeHAHLRVDHVAHP 259 Debaryomyces hansenii CBS767
Q6C2Q7   224 FHskrdTVNAYIVFKNv--kSVKGALTLNGSVFkGFHMRVDSVAHP 267 Yarrowia lipolytica CLIB122
CCJ28747 171 FHtkrdLLNAYIVYETq--eSSKNALALNGVVFlDRHLRVDSVAYP 214 Pneumocystis jirovecii
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