6EU0,6CNB


Conserved Protein Domain Family
CYCLIN_TFIIIB90_rpt1

?
cd20553: CYCLIN_TFIIIB90_rpt1 
Click on image for an interactive view with Cn3D
first cyclin box found in transcription factor IIIB 90 kDa subunit (TFIIIB90) and similar proteins
TFIIIB90, also called B-related factor 1 (BRF-1), or TATA box-binding protein-associated factor, RNA polymerase III, subunit 2 (TAF3B2), is a general activator of RNA polymerase which utilizes different TFIIIB complexes at structurally distinct promoters. TFIIIB90 contains two cyclin boxes. This model corresponds to the first one. The cyclin box fold is generally a protein binding domain, but binds DNA in TFIIIB90.
Statistics
?
PSSM-Id: 410256
Aligned: 50 rows
Threshold Bit Score: 116.863
Created: 2-May-2019
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:6EU0; Saccharomyces cerevisiae RNA polymerase III initial transcribing complex binds DNA, contacts at 4A
    View structure with Cn3D

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1         #                                      ####                                   #
6EU0_Z        78 ATLNNARRKLRAVSYALHIpEYITDAAFQWYKLALANNFvQGRRSQNVIASCLYVACRKekt--hhMLIDFSSRLqvSVY 155 Saccharomyces c...
AAF72066      85 VTIKKAKKDITLLCQQLQLsQHYADTALNFFKMALGRHLtRGRKSTHIYAACVYMTCRTegt--shLLIDISDVQqiCSY 162 fruit fly
KFM82270      83 ITCQKAKQSIQALASKLRLnTRQVESAFAFYKLALARHLtKGRNSTQVIAACVYMVCRKdgt--ehMLLDFSDVLqiSVY 160 Stegodyphus mim...
EFX79436      83 ITMKRAREKITTMGQQLNLnQHCIDMAVNFYAMALTRHLtNGRKSSHTVAACIYITCRMegt--ahLLIDIADVIdiDVY 160 common water flea
CBY38206      76 VTLRKAKESICRLCAELRLpKQHEDEAYNYYRLALNKSFtRGRRAEQVYASCVYLSCRLnprqnelMLLDFSQVLkvNVY 155 Oikopleura dioica
XP_002683064 101 QTIEKAKRRISVIALLMKIpNHYVDRATNTYKLALLKGStKARNPDIVAAACLYFVLRQdkq--pyMLMDFSESMktDVF 178 Naegleria grube...
NP_001309558  79 MTYAKGRKVIDELGSQLRInSHCMNTAFNFYKMCVSRNLtRGRNRSSVVAVCMYITCRLent--ahLLLDFSDVTqiNVF 156 Caenorhabditis ...
AGE95396      68 DSSYYIKNTIGGICASLGLgVDHVECSFRWYKLLLQYNLsKGKSILYTLSACIYIVCRQert--phMLMDFSNALhiDVF 145 Encephalitozoon...
AFP65211      73 IILSSARRKIHQFGNALKLkSSYQEEAYRFFVFAFQRGFvPAHKFESVCISCLYVVCRRkkt--phLLVDFSDLTqiQTY 150 Chroomonas meso...
XP_001713305  68 NLNSGIKRKFHIYGNLLNLnQINIEKSMTLYLKISEINFvINKKVDLYIISCLYMISRFekt--phLLVDFSDISqiRTN 145 Guillardia theta
Feature 1           #  ##     
6EU0_Z       156 SIGATFLKMVKKL 168 Saccharomyces cerevisiae S288C
AAF72066     163 ELGRTYLKLSHAL 175 fruit fly
KFM82270     161 ELGKTYLKLTTAL 173 Stegodyphus mimosarum
EFX79436     161 TLGHNFMQIAKTF 173 common water flea
CBY38206     156 ILGKTFLKLSQEL 168 Oikopleura dioica
XP_002683064 179 LIGHCFLDLMTAL 191 Naegleria gruberi strain NEG-M
NP_001309558 157 DLGRNLNYLSRSL 169 Caenorhabditis elegans
AGE95396     146 KIGKSFLKITNIL 158 Encephalitozoon cuniculi
AFP65211     151 KIGGIFLKFIRIF 163 Chroomonas mesostigmatica CCMP1168
XP_001713305 146 KIGVEFLKISKNL 158 Guillardia theta

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap