1XBR


Conserved Protein Domain Family
T-box_TBXT_TBX19-like

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cd20192: T-box_TBXT_TBX19-like 
Click on image for an interactive view with Cn3D
DNA-binding domain of T-box transcription factor T, T-box transcription factor 19 and related T-box proteins
Tbx19 (also known as Tpit) is a T-box factor restricted to two pituitary (pro-opiomelanocortin) POMC-expressing lineages, the corticotrophs and melanotrophs; it controls terminal differentiation of these lineages. TBX19 activates POMC gene transcription with the cooperation of another transcription factor Pitx1. TBXT, also known as Brachyury protein, or protein T, is a transcription factor needed for posterior mesoderm formation and differentiation as well as for the notochord development during embryogenesis. It binds to a 24 base-pair (bp) palindromic site (called the T site) and activates gene transcription when bound to such a site. This subfamily belongs to the T-box family of transcription factors which play a multitude of diverse functions throughout development. TBXT is the founding member of the T-box family, members of which share a conserved DNA-binding domain (T-box) which binds DNA in a sequence-specific manner. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development, and conserved expression patterns.
Statistics
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PSSM-Id: 410318
Aligned: 26 rows
Threshold Bit Score: 293.4
Created: 8-Mar-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA bindinghomodimer
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Xenopus TBXT monomers dimerize upon DNA binding forming a loose dimer
  • Structure:1XBR; Xenopus TBXT monomer binds DNA, contacts at 4A
    View structure with Cn3D
  • Citation:PMID 9349824

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                  #  ##                              # #                 
1XBR_A          2 LKVSLEeRDLWTRFKEl-tNEMIVTKnGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEpqa- 79   African clawe...
XP_025418730   17 VRARLLdAQLWSEFLAi-nNEMIVTKtGRRMFPVIKTQVTGLSPGDMYTVFLEFVQVVGQRWKYINSEWSPTTTSDpat- 94   yellow sugarc...
CDO67948       72 VTIQLEnVPLWEEFRTc-pTEMVVTRqGRRMFPVVTVSVKGLRPEAMYSVFMDMILVDNHRWKYVRGEWVSGGKADqp-- 148  Sycon ciliatum
XP_015781182   23 ISVILLqEELWNKFNSi-tTEMIVTKsGRRMFPVVKLEVKGLETNSMYVIILEFCQLGDNRWKFVNNEWVQGSKSEvksr 101  two-spotted s...
CDO67949       91 VTVQLEnNDLWQSFARc-iNEMIVTRsGRRMFPIYSVSVKGLNPSAMYSVYLDFEVVGQQRWKFVNRKWVSGGRADpp-- 167  Sycon ciliatum
XP_003739055    6 PQVTLLdFELWLKFREv-tNEMIVTKsGRRMFPVIRIQLSGLDPFGRYSVRLEIPQFGSSRYKFQGTEWVPSGKCEsps- 83   western preda...
CAD66614       41 PEVELVnAELWKEFHSn-tNEMIITKaGRRMFPLLELSFQNLDRKATYILLLALRTKDNRRWRFLNGEWQGSVPGVgsvt 119  Suberites dom...
KJE94977      443 PNVALEsSKLWAKFADa-tNEMIVTRtGRNMFPVLRFDITNLDPNTLYAIMLDIAPADGIRWKYVSGEWWVGGKSDapt- 520  Capsaspora ow...
RMZ98336       55 ISIDLEeKELWTRFYHl-tNEMILTKaGRRTFPLIRIKMSGLDESSLYTVQIEFRLSDNLKYRFVNGEWKTSPRNDnfkt 133  Brachionus pl...
OQV24895       58 IRVDLQdMEMWRTFTTgvmNEMIITKtGRKLFPVMRVRIRGLDPTRMYSVAMEFGQVGTNRYKYNEGGWQSAGKAEvqp- 136  Hypsibius duj...
Feature 1                                           #  ##            ##                           
1XBR_A         80 ------psCVYIHpDSPNFGAH-WMKDPVSFSKVKLTNKmn--ggGQIMLNSLHKYEPRIHIVRvggt------------ 138  African clawe...
XP_025418730   95 ------knPFYKHpESPNFGKH-WMEQPISFAKIKLTNRpd--nvGQTHLNSLHQYETKLHIVKvgd------------- 152  yellow sugarc...
CDO67948      149 ------haTIYKHpDSPHYGSH-WVKSPISFSKVKLTNRig---eGHLVLNSLHKYEARVHVVPeqgqc----------- 207  Sycon ciliatum
XP_015781182  102 -----seySYYTHpESPNYGGH-WMKKPVEFPKVKLTNKqpp-eeGQVVLNSLHKYEPKVHIIKsnpg------------ 162  two-spotted s...
CDO67949      168 ------iqSRYKHpDSPHYGSH-WMAKPIQFGKVKLTNKnn---sEQVVLNSLHNYEPCLHIVPepghs----------- 226  Sycon ciliatum
XP_003739055   84 ------vqSGFVHqESPNSGSF-WMKGPVAFNKVKLTNKnts-dsRYIVLNSLHLYEPRVIITAees------------- 142  western preda...
CAD66614      120 geggegkgSVYVHpSSPSTGEEwMRLGPVGFTKLKLSNKgn--ngGKVKLSSLHHYQPLVCLVKlppdesslqehkqrhd 197  Suberites dom...
KJE94977      521 ------gpTMYVHpDSPKSGKY-WMQRPISFSRLKLTNRpn--tkGNIVLSSLHKYQPQLHIVSvpsmna---------- 581  Capsaspora ow...
RMZ98336      134 ----aqpaIVYEHcDSPNFGHH-WSKDSVAFAKLKLTNNentknlDAVFLKSLHKYDPIIHVYRhdkknv---------- 198  Brachionus pl...
OQV24895      137 ------ltSTYVHhKSPNYGKF-WTNGYVDFSKIKVSNKqs---eDMIWMNSMHMYEPRIIISRidplaa---------- 196  Hypsibius duj...
Feature 1                                  ###     #  ##  ### ###  
1XBR_A        139 --------qrmITSHSFPETQFIAVTAYQNEEITALKIKHNPFAKAFLD 179  African clawed frog
XP_025418730  153 --------pedVQIFPMPQTRFMAVTAYQNEEVTKLKIKYNPFAKAFKD 193  yellow sugarcane aphid
CDO67948      208 ------vhplpSIWKSFRETQFIAVTAYQNEEVTQLKIKNNPYAKAFTE 250  Sycon ciliatum
XP_015781182  163 -------hepeTISFCLPTTQFIAVTAYQNESITDLKIKNNPYAKAFAE 204  two-spotted spider mite
CDO67949      227 -------qgcrAAKASFPQTQFIAVTAYQNEAITELKISHNPFAKSFKD 268  Sycon ciliatum
XP_003739055  143 ---------gnQWTFPMSETQFIAVTAYQNERVTSLKVRHNPFAKAFLD 182  western predatory mite
CAD66614      198 hgkttahpvleITTNEFPETQFIAVTAYQNDMITQMKIKHNPFAKAFLP 246  Suberites domuncula
KJE94977      582 -----pthgqpTSVHTFPETAFIAATAYQNDYIKDLKIKNNPFAKAFLN 625  Capsaspora owczarzaki ATCC 30864
RMZ98336      199 ------ddkvlVFSKFFKETQFIAVTAYQNEQITNLKIKHNPFAKAFLN 241  Brachionus plicatilis
OQV24895      197 ------dgeviVFQKRFEIGRFMAVTSYQNDDVTKLKVKYNPFAKGFVE 239  Hypsibius dujardini

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