Conserved Protein Domain Family
T-box_Fungi_incertae_sedis

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cd20683: T-box_Fungi_incertae_sedis 
T-box DNA-binding domain; uncharacterized subfamily of fungi classified as Fungi incertae sedis
Fungi incertae sedis refers to a fungal taxonomic group where its broader relationships are unknown or undefined. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.
Statistics
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PSSM-Id: 410334
Aligned: 11 rows
Threshold Bit Score: 302.776
Created: 23-Jul-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
DNA binding
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:based on related T-box transcription factors bound with DNA
  • Comment:T-box monomers dimerize upon DNA binding; some form weak dimers, others tight dimers, some may bind as non-associating monomers where the dimer is kept in register by the DNA

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                    ##                                #                  
XP_016605825   86 PTILLEDAKLWAQFHSvgNEMIITKgGRCLFPTLRFRPICLDPqALYSIAIDIVQtvphKFKFKNGHWAPVSLDAgsgge 165  Spizellomyces...
EPZ31826      139 YQLRLDQEDLWAKFHYlgNEMILTRnGRCFFPLIKGDISNLDPiKHYTIMMDVVPvskrRLRFRNGSWNYSQKSEelsp- 217  Rozella allom...
KFH72438       95 PQLTLKDRSLWAKFNAidNEMILTQtGRAIFPYLRFRASNLDPdSIYAIAFQIEQmdtkKYRYVNKEWQVDDKLIngpaa 174  Mortierella v...
OAQ27891      145 PSLELLDAELWMKFHHldNEMIVTPhGRSLFPLLKVRAVDLDAqVEYSVALTLEGadsaRFRFSNSGWNPIKPLNhddda 224  Mortierella e...
OZJ05536      176 VDVTLVQADLWHQFHQhqNEMIITRsGRCIFPSLEYRVANLDPkATYTFGIDILQvspnRHRWRRGRWESLGEDQrrfgv 255  Bifiguratus a...
GBC01186      124 SDLLLVNSDLWSQFYHvnNEMIITKaGRCIFPLLKFQPVNLDPtVNYSFVIDFVQvskdRYRFKKGCWISIGLDRrkflp 203  Rhizophagus c...
RKO96938      189 PLVGLENVELWNQFHSvqNEMIITKiGRCLFPTLRFYAVHLEPkRRYRFYLDIALltpcRFRFLNGTWHQATDVDvegsv 268  Caulochytrium...
ORX91024       48 GALHLEEASLWKQFNSiaNEMIITKtGRCLFPSLKFKATDLDPyALYKIKLDFEQispeRFKFRNDEWVVVHSDVsksqp 127  Basidiobolus ...
XP_021876701   79 PTLELVDDELWAKFFSlqNEMIITNsGRCLFPCLRFKATHLNPrTLYSITLEFEKvnpeRFRFCNGQWTAISASArgnan 158  Lobosporangiu...
OAQ33863      152 PALLILDADLWAQFHEqhNEMIITKsGRCLFPCLRFKILGLDPdSYYSLRVDFEMltpnRFRFSNGRWKPMEPLQqvddi 231  Mortierella e...
ORX82062      908 FVIVLEDADLWKKFNSviNEMIITKsGRCLFPILRFQPINLEPkCQYSFAIDIIQaspyKYKYRDKKWISGDVKFfapp- 986  Anaeromyces r...
Feature 1                                                                       #  #              
XP_016605825  166 se----------------dmlvptcRAILHss------------aTQSGAfWIQQGISFAKIKLTNRcpsslrspspg-- 215  Spizellomyces...
EPZ31826      218 ---------------------iglyKMYKSee------------qATYGEnLMKNGFSFAKAKLSNDqgkitdidfske- 263  Rozella allom...
KFH72438      175 ---------------------vydpHWYYHpd------------sYSTGKtLMNDIISFQSIRISNRtpnskt------- 214  Mortierella v...
OAQ27891      225 fssarlapgpsvstsatafksiqphQFYIHpd------------gFKPGDqWMRHEISFDRIKLSNKaiasspcd----- 287  Mortierella e...
OZJ05536      256 lhhrdtdav---kpfdgadvhlldtAVYWHpe------------gPKRGAeWMGDTVAFSQIKVSNRqlptskrk----- 315  Bifiguratus a...
GBC01186      204 nnsns----------rdskfgtvrgNPFTHpd------------sPQTGAyWMNFGVSFPKIKLTNRlrlsslsakkrd- 260  Rhizophagus c...
RKO96938      269 ---------------------hpapELYLNpl------------aSQSGEfWMANGISFVKAKISNRwvqaavargprmv 315  Caulochytrium...
ORX91024      128 qpytmse-------kkrpglecwitREYTHpdspqsgkslnlfgmNSTGAyWVKNGVSFTKVKLTNRlensidnkvlnng 200  Basidiobolus ...
XP_021876701  159 vndg------------afadfvlaqESYMHpd------------gYRTGShWMASQISFAKVKLSNKfphsttrhgk--- 211  Lobosporangiu...
OAQ33863      232 fssgshdscd-stdhstattsghlrESFIHpd------------rWQLGRhWMADPISFAKVKLTNKvesplnvvkrssk 298  Mortierella e...
ORX82062      987 ----------------------tqkKEYYHpd------------sPQTGHfWMTHGISFSKIKLTNHiknisegistkks 1032 Anaeromyces r...
Feature 1                                                      ##                                 
XP_016605825  216 ----------------------------sspdypsvpeGYFYLn-SFHQYQPRVHLIKhsae------gqsVTTYLFEET 260  Spizellomyces...
EPZ31826      264 ---------------------------litqvisedqsNHLIVq-SFYRYVPRIHIVEhdtkdllfhdnllTTTFTFQEL 315  Rozella allom...
KFH72438      215 ---------------------------------skssnNHLFLltSFRRYRPRIRLLQfsqhdr--vktigSWSFMFDET 259  Mortierella v...
OAQ27891      288 -------------------------------sktasssQVFSVt-TNHKYRLQLHLTQrkrg-----eddlSWTFDYPCT 330  Mortierella e...
OZJ05536      316 -------------------------------qsasaqdGTFLLn-SFHVYQPRLHILQyeddd---rsdarVLTYVFEET 360  Bifiguratus a...
GBC01186      261 ---------------------------svtdnnsslppGYFYLt-SFHKYWPRIKMIKhsan------edqETFFTFEET 306  Rhizophagus c...
RKO96938      316 qd----------------------qidyesngvahlgkGHFPCt-SFHMYQPRLHMIAyplphe-mgqqarTTTFLWNQT 371  Caulochytrium...
ORX91024      201 sfm--------------------dcrrsafdpefalpdGYFPLk-TFHKYQPRVHLIKlneg------iqqEKTFVFEEA 253  Basidiobolus ...
XP_021876701  212 ----------------------------sqhgpsakgdDHIFHmmSFYKYRPRVHLIEcssgs---qtvisSVPHTFETT 260  Lobosporangiu...
OAQ33863      299 kgtnstv-----------svnkdngdpnakmtgvndinTNMFHmtSFHKYCPRIYLTQrakds---hdiinSIVYRFDRT 364  Mortierella e...
ORX82062     1033 dmleeynddiitdkkhdshskrnstkfniinsiaklpeNHFYLs-SFFMYEPCLYLIRhenn------kkyISTITFQET 1105 Anaeromyces r...
Feature 1              ####    #  ##  #######   
XP_016605825  261 KFIAVTHYQSEKVNSLKKNYNPHAKGFKDY 290  Spizellomyces punctatus DAOM BR117
EPZ31826      316 EFVGVTHYQNQAVNSLKKSYNPHAKGFKED 345  Rozella allomycis CSF55
KFH72438      260 SFFAVTHYQNRAVNRLKTDHNPHAKAFRTN 289  Mortierella verticillata NRRL 6337
OAQ27891      331 EFIAVTQYQNDDVRILKTLNNPHAAAFKKK 360  Mortierella elongata AG-77
OZJ05536      361 EFIAVTHYQNDKVNRLKKDYNPHAKGFKTL 390  Bifiguratus adelaidae
GBC01186      307 AFIAVTHYQNEEVNILKKINNPHAKGFKGS 336  Rhizophagus clarus
RKO96938      372 RFIAVTHYQNERVNALKKDYNPHAKGFKDA 401  Caulochytrium protostelioides
ORX91024      254 AFIAVTHYQNNAVNQLKKQYNPHAKGFRII 283  Basidiobolus meristosporus CBS 931.73
XP_021876701  261 SFIAVTHYQNYRVNDLKKGYNPHAKGFRNT 290  Lobosporangium transversale
OAQ33863      365 EFMAVTHYQNYKVNDLKKSHNPHAKGFRGT 394  Mortierella elongata AG-77
ORX82062     1106 KFLAVTHYQNEKVNQLKKNYNPHAKGFKDD 1135 Anaeromyces robustus

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