Conserved Protein Domain Family
C1_AKAP13

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cd20878: C1_AKAP13 
protein kinase C conserved region 1 (C1 domain) found in A-kinase anchor protein 13 (AKAP-13) and similar proteins
AKAP-13, also called AKAP-Lbc, breast cancer nuclear receptor-binding auxiliary protein (Brx-1), guanine nucleotide exchange factor Lbc, human thyroid-anchoring protein 31, lymphoid blast crisis oncogene (LBC oncogene), non-oncogenic Rho GTPase-specific GTP exchange factor, protein kinase A-anchoring protein 13 (PRKA13), or p47, is a scaffold protein that plays an important role in assembling signaling complexes downstream of several types of G protein-coupled receptors (GPCRs). It activates RhoA in response to GPCR signaling via its function as a Rho guanine nucleotide exchange factor. It may also activate other Rho family members. AKAP-13 plays a role in cell growth, cell development and actin fiber formation. Its Rho-GEF activity is regulated by protein kinase A (PKA), through binding and phosphorylation. Alternative splicing of this gene in humans has at least 3 transcript variants encoding different isoforms (i.e. proto-/onco-Lymphoid blast crisis, Lbc and breast cancer nuclear receptor-binding auxiliary protein, and Brx) that contain a C1 domain followed by a dbl oncogene homology (DH) domain and a PH domain which are required for full transforming activity. This model corresponds to the C1 domain. The C1 domain is a cysteine-rich zinc binding domain that does not bind DNA nor possess structural similarity to conventional zinc finger domains; it contains two separate Zn(2+)-binding sites.
Statistics
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PSSM-Id: 410428
Aligned: 18 rows
Threshold Bit Score: 97.0275
Created: 7-Oct-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:H C C C C H C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:Two non-consecutive sets of zinc-binding residues form two separate metal-binding sites.
  • Comment:Based on the structure evidence that Rattus norvegicus ROCK2 binds two Zn2+ ions

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #             #  #           #  #    #  #      #      
Q12802       1785 DKKTVNGHTFSSIPVv-gPISCSQCMKPFTnKDAYTCANCSAFVHKGCRESLAsCAKVKMK 1844 human
XP_015198962  406 DKKTLNGHLFSPVTGf--SAQCYHCNKAPNtKEVYHCATCNAYVHKGCRENLPsCTKVKVK 464  spotted gar
XP_017571887   39 DKRSSGGHLFSSVSTa-pPSPCMQCSKPINtKDALQCTNCSAHVHKGCKEGLPaCARVKMK 98   red-bellied piranha
XP_012673806  395 EKASSNGHVFSAITNa-pSTPCQHCSKPLNtKEALICNNCSTHVHKGCRENLPvCAKVKMK 454  Atlantic herring
XP_028678559 1842 DKKVINGHLFSAATTc-vPTLCYQCSKALTtKEIYFCSNCSVYIHKSCRDALPvCAKVKMK 1901 reedfish
CAG03106      978 EKKIINGHQFTPVASv-qGSQCSQCSKAFTsREAFHCTHCSASVHKSCRDSLPsCAKVKIK 1037 spotted green pufferfish
TRY82590     1021 DRKSVNGHLFHSLNPl-hPALCQQCNKTLNiKDALSCTSCNVRVHKACRESLPiCPMNRIK 1080 Danionella translucida
KAA8590721     92 EKKSANGHLFILVSSppsTAGCQHCSKALPcKESFLCSNCGANVHKSCRESLAvCTKSKTK 152  orangethroat darter
XP_007906530 1341 DKKVLIHHAFCAILVy-gSQQCHQCNKVISsREAYLCTNCNVQVHKSCRDSAApCSKIKQR 1400 elephant shark
XP_020790917   39 DKKWSQSHVFGPVCPp-vSSCCQHCNKPLQtKECFQCSNCGVQVHKSCKDSVAvCVKNKNK 98   great blue-spotted mudskipper

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